Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_031224.1 Length=59443 Score E Sequences producing significant alignments: (Bits) Value seq17077 131 6e-26 >seq17077 Length=1461 Score = 131 bits (144), Expect = 6e-26 Identities = 336/502 (67%), Gaps = 20/502 (4%) Strand=Plus/Plus Query 51813 TTCCCGCTCATCACCACCAAGAAGGTGCATTTCCCATCAGTGGTCGGG---GAGTTGCTG 51869 |||||||| ||||||||||| |||||| ||| ||| ||||| | ||| |||| Sbjct 961 TTCCCGCTGCTCACCACCAAGCGGGTGCACTTCAAATC---GGTCGCGATCGAGCTGCTC 1017 Query 51870 TGGTTGCTTTCGGGCTCTACGAACGTCAACGATCTCCATAAGTACGGCGTCAGCATTTGG 51929 ||||| || ||| | ||| ||| ||| | ||||||| | ||| ||| Sbjct 1018 TGGTTCCTGCGCGGCGAGAGCAACACCAAGTTCCTCACCGACAACGGCGTGACCATCTGG 1077 Query 51930 GACGAATGGGCGGATGAAAATGGTAACCTGGGTCCTGTGTATGGTAAGCAGTGGCGTAGT 51989 ||||| ||||| || | | || ||||||| || || || || ||||||||| Sbjct 1078 GACGAGTGGGCCGACGCGAGCGGCGACCTGGGCCCCGTCTACGGCGTGCAGTGGCGCTCC 1137 Query 51990 TGG--GATGCTGGTGGCGGCAAGGTCATCGATCAGATC---CATGAAGTCGT-CAAATCA 52043 ||| || || || || || || |||||| |||||| || | ||| || ||| Sbjct 1138 TGGCCGACGCCGGCGG--GCGAGCACATCGACCAGATCTCGCAGGTGATCGAGCAGATCC 1195 Query 52044 ATTAAGAACGATCCTGATAGTCGACGGCACATTGTCTCTGCTTGGAATGTGGGTGATTTG 52103 || |||| || || || || | ||| ||||| || ||||| |||| || | Sbjct 1196 GTTC-GAAC---CCGGACTCGCGCCGTCTCATCGTCTCCGCGTGGAACGTGGCGGAGCTC 1251 Query 52104 GATGATATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAAGGTAAG 52163 || | |||||| | || || ||||| | | ||||| ||||| || || || || ||| Sbjct 1252 GACCAGATGGCGCTCGCACCGTGCCACGCGTTCTTCCAGTTCTACGTGGCCGACGGCAAG 1311 Query 52164 CTTTCGTGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACATT 52223 || |||||||| | || ||||| ||||||||||||||| | || || ||||| || || Sbjct 1312 CTCTCGTGCCAGCTCTACCAGCGCTCTGCCGACATGTTCCTCGGGGTGCCGTTCAATATC 1371 Query 52224 GCCAGCTATTCCTTGCTGACGCATCTGATTGCTCGAGCAG-TTGGCCTTGATGTTGGTGA 52282 ||| ||| | |||| |||| || | || | ||||| || || || || || Sbjct 1372 GCCTCCTACGCGCTGCTTACGCTCATGGTCGCGC-AGCAGACCGGGCTCGAGCCCGGCGA 1430 Query 52283 ATTCATTTGGACTGGTGGCGAC 52304 ||| | ||||| || |||||| Sbjct 1431 GTTCGTCTGGACCGGCGGCGAC 1452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190020244248990