Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_031230.1 Length=98136 Score E Sequences producing significant alignments: (Bits) Value seq16795 116 2e-21 >seq16795 Length=1614 Score = 116 bits (128), Expect = 2e-21 Identities = 168/234 (72%), Gaps = 10/234 (4%) Strand=Plus/Minus Query 43562 GCTCGACCAGGACCCGGGCGTCGACGTCATCATCTGCACCCGAGGCGGTGGA----TCCA 43617 ||||||| || || | ||||| ||||||||| | |||| ||||| || |||| Sbjct 593 GCTCGACGCCGATCCCGAGGTCGAGGTCATCATCGTCGCCCGCGGCGGCGGCGATTTCCA 534 Query 43618 AGGAGGACCTGCTGCCGTGGTCTGATGAGGGCTTGGTGCGTGCGGCGTTCGCTTGCAAC- 43676 | |||||||||||| || ||||| || |||| ||||||| || || || Sbjct 533 ----GCACCTGCTGCCGTTCAGCGACGAGGGGGTGCTGCGCGCGGCGTCCGAG-GCGACG 479 Query 43677 ACCCCCATTGTCTCCGCGATCGGTCACGAGAACGACTGTCCACTCCTTGACCGTGTGGCG 43736 || || || || ||||||||| |||||| |||| | || || || ||| || || Sbjct 478 ACGCCGATCGTGAGCGCGATCGGGCACGAGGCCGACCGGCCGCTGCTCGACGAGGTCGCT 419 Query 43737 GACCTGCGTGCCTCGACGCCCACCGACGCTGCGAAGAGGGTTGTGCCAGACCTC 43790 ||||||||||||||||| || |||||||| |||||| | || ||||| ||| || Sbjct 418 GACCTGCGTGCCTCGACACCGACCGACGCGGCGAAGCGCGTGGTGCCCGACGTC 365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 313782010548303