Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq30935 138 3e-27 seq13386 131 4e-25 seq16010 114 3e-20 >seq30935 Length=6295 Score = 138 bits (152), Expect = 3e-27 Identities = 156/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || ||||| |||||||||||||| |||| | ||| | ||||| || | Sbjct 1474 CAAG-TGAAGGGTCGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGTCCATCCTCGA 1416 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| ||||||||||| | || || || || | | |||||||||||| ||||| | Sbjct 1415 GTTGTTTTCCGGCGAAGATCAATCTTTGTTGATCTGGTGGGATTCCTTCCTTGTCTTGGA 1356 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || ||||||| | || | | |||| || ||| ||||| || ||||| || || | Sbjct 1355 TCTTGGCTTTGACATTTTCGATGGTGTCCGAGGCCTCGACTTCGAGGGTAATTGTCTTAC 1296 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| |||||||| ||||||| ||||| Sbjct 1295 CCGTCAGAGTCTTGACGAAGATTTGCAT 1268 >seq13386 Length=19191 Score = 131 bits (144), Expect = 4e-25 Identities = 155/209 (74%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| ||||| || ||||||||||||||||| | || || | |||||||| | Sbjct 13768 CAAG-TGAAGGGTAGATTCCTTTTGGATGTTGTAATCAGACAATGTGCGTCCATCTTCCA 13826 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 ||| ||||| || || || | || || || | | |||||||||||| ||||| | Sbjct 13827 ATTGTTTTCCGGCAAAAATGAGACGTTGTTGATCTGGTGGGATTCCTTCCTTGTCTTGGA 13886 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || ||||||| | || | | |||| ||| || |||||||| || || ||||| | Sbjct 13887 TCTTAGCTTTGACATTTTCGATGGTGTCAGAAGCTTCAACTTCAAGTGTGATTGTTTTTC 13946 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | ||||| ||||| ||||||| |||||| Sbjct 13947 CAGTGAGTGTCTTGACGAAGATTTGCATT 13975 Score = 120 bits (132), Expect = 7e-22 Identities = 152/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || || |||||||| |||||||| |||| | ||||| || ||||| | Sbjct 12219 CAAG-TGGAGTGTTGATTCTTTTTGAATGTTGTAGTCGGAGAGGGTTCTTCCGTCTTCCA 12277 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 ||| ||||||||||| | || || ||||| | | ||||||||| || ||||||| Sbjct 12278 ATTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGAA 12337 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 |||| ||||||| | || | | | || ||| ||| |||||||| || || || || | Sbjct 12338 TTTTAGCTTTGACATTTTCGATGGTATCAGAAGCCTCAACTTCAAGGGTGATGGTCTTTC 12397 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | ||| || || |||| ||||| Sbjct 12398 CGGTCAAAGTTTTGACAAAGATTTGCAT 12425 Score = 120 bits (132), Expect = 7e-22 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | ||||| | || || || |||||||||||||||||||| |||| | |||| Sbjct 13526 CTGAGACGAAGGACCAAGTGGAGGGTGGACTCTTTTTGGATGTTGTAGTCGGAGAGAGTT 13585 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || |||||||| | ||| ||||| || || | || || ||||| | | |||||| Sbjct 13586 CTTCCATCTTCCAATTGTTTTCCGGCAAAAATCAATCTTTGTTGGTCTGGTGGAATTCCT 13645 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 || || |||||||||||| ||||||| | || | |||| ||| || ||||| | Sbjct 13646 TCTTTATCTTGAATTTTTGCTTTGACATTTTCAATTGTGTCCGAAGCTTCAACTTCCAAT 13705 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| || || | || || || |||| ||||| Sbjct 13706 GTGATGGTTTTTCCAGTCAATGTTTTGACAAAGATTTGCAT 13746 Score = 118 bits (130), Expect = 2e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | ||||||||| || || |||||||||||||| |||| | ||| | |||||| Sbjct 11986 AGAACCAAATGAAGAGTCGATTCCTTTTGGATGTTGTAGTCGGAGAGAGTGCGACCATCT 12045 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | ||| ||||||||||| || | || || || | | |||||||||||| ||| Sbjct 12046 TCCAATTGTTTTCCGGCGAAGATGAGACGTTGTTGATCTGGTGGGATTCCTTCCTTGTCT 12105 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || ||||| | || | | |||| || || ||||| | || || ||| Sbjct 12106 TGGATCTTGGCCTTGACGTTTTCGATGGTGTCAGAGGCTTCGACTTCCAAGGTGATGGTT 12165 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 ||||| ||||| ||||| ||||| | |||||| Sbjct 12166 TTGCCGGTGAGGGTCTTGACGAAAATTTGCATT 12198 Score = 116 bits (128), Expect = 9e-21 Identities = 152/209 (73%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || || ||||||||||||||||| |||| | ||||| |||||||| | Sbjct 13996 CAAG-TGAAGTGTTGATTCTTTTTGGATGTTGTAGTCGGAGAGGGTTCTTCCATCTTCCA 14054 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 ||| ||||||||||| | || || ||||| | | ||||||||||| ||||| | Sbjct 14055 ATTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGAATTCCTTCCTTGTCTTGGA 14114 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || ||||| |||| | | | || ||| || ||||| | ||| || ||||| | Sbjct 14115 TCTTGGCCTTGACGTTCTCAATGGTATCAGAAGCTTCGACTTCCAAAGTGATGGTTTTTC 14174 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || | ||| || || |||| |||||| Sbjct 14175 CAGTCAAAGTTTTGACAAAGATTTGCATT 14203 Score = 105 bits (116), Expect = 2e-17 Identities = 149/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || || || ||||| || || ||||| | | ||||| |||||||| | Sbjct 13031 CAAG-TGGAGTGTTGATTCCTTTTGAATATTATAATCCGAAAGGGTTCTGCCATCTTCCA 13089 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 ||| ||||||||||| | || || ||||| | | |||||||| || ||||| | Sbjct 13090 ATTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGAATTCCTTCTTTGTCTTGGA 13149 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || |||||| | || | | |||| ||| || ||||| | || |||||||||| Sbjct 13150 TCTTGGCCTTGACATTTTCAATGGTGTCAGAAGCTTCGACTTCCAAGGTGATAGTTTTGC 13209 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||||| ||||| ||||| | ||||| Sbjct 13210 CGGTGAGGGTCTTGACGAAAATTTGCAT 13237 Score = 84.2 bits (92), Expect = 5e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024 ||||| ||||| | || || ||||| | | ||||||||||| ||||| || || | Sbjct 12568 CCGGCAAAGATCAATCTTTGTTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATCTTGGCT 12627 Query 152025 TTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084 ||||| | || | | |||| ||| || ||||| | || || ||||| || |||||| Sbjct 12628 TTGACGTTTTCGATGGTGTCAGAAGCTTCAACTTCCAATGTGATGGTTTTTCCGGTGAGA 12687 Query 152085 GTCTTCACGAAGACCTGCATT 152105 ||||| ||||||| |||||| Sbjct 12688 GTCTTGACGAAGATTTGCATT 12708 Score = 84.2 bits (92), Expect = 5e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024 || |||||||| | || || ||||| | | |||||||||||| ||||| || || | Sbjct 13379 CCAGCGAAGATCAATCTTTGTTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCT 13438 Query 152025 TTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084 |||||| | || | | |||| ||| || ||||| | ||| || ||||| || || | | Sbjct 13439 TTGACATTTTCGATGGTGTCAGAAGCTTCGACTTCCAAAGTGATGGTTTTTCCGGTCAAA 13498 Query 152085 GTCTTCACGAAGACCTGCATT 152105 || || ||||||| |||||| Sbjct 13499 GTTTTGACGAAGATTTGCATT 13519 >seq16010 Length=816 Score = 114 bits (126), Expect = 3e-20 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | || || | ||| || || || || ||||||||||||||||| | | |||| Sbjct 144 CTGAGACGAAGAACCAAATGGAGTGTTGATTCCTTTTGGATGTTGTAATCAGAAAGAGTT 203 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || |||||||| | ||| ||||| || || | || || || | | | ||||||| Sbjct 204 CTTCCATCTTCCAATTGTTTTCCGGCAAAAATCAATCTTTGTTGATGTGGTGGGATTCCT 263 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 || || |||||||||||| ||||||| | || | |||| ||| || ||||| || Sbjct 264 TCGTTATCTTGAATTTTTGCTTTGACATTTTCAATTGTGTCGGAAGCTTCGACTTCGAGT 323 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || |||||||| || || | || || |||| || ||||| Sbjct 324 GTGATAGTTTTTCCAGTCAATGTTTTGACGACGATTTGCAT 364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153324686262089