Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq17384 91.5 2e-13 seq17567 82.4 9e-11 seq16951 82.4 9e-11 >seq17384 Length=2032 Score = 91.5 bits (100), Expect = 2e-13 Identities = 72/85 (85%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 158202 GTTTCGGGGTGTAGCTCAGTTTGG-TAGAGCGCCGTCTTTGGGAGGCGGATGCCGTAGGT 158260 ||||||||| ||||||||| |||| ||||||||| ||||||||| ||| | || |||| Sbjct 53 GTTTCGGGGCGTAGCTCAGCTTGGCTAGAGCGCCCGCTTTGGGAGCGGGAGGTCGCAGGT 112 Query 158261 TCGAATCCTATCACCCCGACTTGGA 158285 ||||||||| || |||||||| ||| Sbjct 113 TCGAATCCTGTCGCCCCGACTCGGA 137 >seq17567 Length=2024 Score = 82.4 bits (90), Expect = 9e-11 Identities = 58/65 (89%), Gaps = 1/65 (2%) Strand=Plus/Minus Query 157504 TGGCGGAATTGGTAGACGCGCTGGGTTTAGGTTCCAGTGTCCTTGCGACGTGGAGGTTCA 157563 |||||||||||| ||||||||||| ||||||||||||||| ||| |||||| |||||| Sbjct 189 TGGCGGAATTGGCAGACGCGCTGGATTTAGGTTCCAGTGT-CTTCGGACGTGAGGGTTCA 131 Query 157564 AGTCC 157568 ||||| Sbjct 130 AGTCC 126 >seq16951 Length=1564 Score = 82.4 bits (90), Expect = 9e-11 Identities = 58/65 (89%), Gaps = 1/65 (2%) Strand=Plus/Plus Query 157422 CTCAGTAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGCTGGTTCGAATC 157481 ||| ||||||||| ||||||||||||| ||||||||| | ||||||||| |||||||||| Sbjct 77 CTCCGTAGCTCAG-TGGATAGAGCAACGGCCTTCTAATCCGTCGGTCGCAGGTTCGAATC 135 Query 157482 CAGCC 157486 | ||| Sbjct 136 CTGCC 140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596057056583440