Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq30935 197 3e-45 seq13386 188 1e-42 seq16010 150 4e-31 seq2100 96.9 7e-15 seq26738 95.1 3e-14 seq16908 84.2 5e-11 seq5494 84.2 5e-11 >seq30935 Length=6295 Score = 197 bits (218), Expect = 3e-45 Identities = 181/229 (79%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 282871 AACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG 282930 |||| ||||| || || || |||| || | || || ||||||||||||||||| | Sbjct 1496 AACCTCCACGAAGACGGAGAACCAAGTGAAGGGTCGACTCCTTTTGGATGTTGTAGTCGG 1437 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 ||| || || |||||||| |||||||| ||||| |||||||| | |||||| || | Sbjct 1436 AAAGAGTACGTCCATCCTCGAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGATCTGGTG 1377 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 | || || ||||||||||||||||| ||||| || | ||||| |||||||| || |||| Sbjct 1376 GGATTCCTTCCTTGTCTTGGATCTTGGCTTTGACATTTTCGATGGTGTCCGAGGCCTCGA 1317 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||||| || || ||||||||||||| |||||| ||||| || ||||| Sbjct 1316 CTTCGAGGGTAATTGTCTTACCCGTCAGAGTCTTGACGAAGATTTGCAT 1268 >seq13386 Length=19191 Score = 188 bits (208), Expect = 1e-42 Identities = 181/232 (78%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 282869 TGAACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTC 282928 |||||||||||| |||||||| |||| ||| | || ||| ||||||||||||||||| Sbjct 11967 TGAACCACCACGAAGGCGAAGAACCAAATGAAGAGTCGATTCCTTTTGGATGTTGTAGTC 12026 Query 282929 AGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACC 282988 | || ||||| ||||| || | |||||| ||||| ||||| | ||||||||| || Sbjct 12027 GGAGAGAGTGCGACCATCTTCCAATTGTTTTCCGGCGAAGATGAGACGTTGTTGATCTGG 12086 Query 282989 CGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTC 283048 || || || ||||||||||||||||| || || ||| | ||||| ||||| || ||||| Sbjct 12087 TGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCGATGGTGTCAGAGGCTTC 12146 Query 283049 GACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 |||||| | ||||| || || || || | ||||| ||||| || |||||| Sbjct 12147 GACTTCCAAGGTGATGGTTTTGCCGGTGAGGGTCTTGACGAAAATTTGCATT 12198 Score = 170 bits (188), Expect = 4e-37 Identities = 175/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || |||| || | || ||| |||||||||||||| |||| Sbjct 13747 ACCACCACGAAGACGGAGAACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAATCAGA 13806 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | ||||| ||||| || | |||||| |||||||| || | ||||||||| || || Sbjct 13807 CAATGTGCGTCCATCTTCCAATTGTTTTCCGGCAAAAATGAGACGTTGTTGATCTGGTGG 13866 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || ||||||||||||||||| ||||| || | ||||| ||||| |||||||| || Sbjct 13867 GATTCCTTCCTTGTCTTGGATCTTAGCTTTGACATTTTCGATGGTGTCAGAAGCTTCAAC 13926 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 ||| || ||||| || || || || | ||||| ||||| || |||||| Sbjct 13927 TTCAAGTGTGATTGTTTTTCCAGTGAGTGTCTTGACGAAGATTTGCATT 13975 Score = 168 bits (186), Expect = 1e-36 Identities = 153/193 (79%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||||||||||||||||||||| | || || | ||||| || | |||||| ||||| || Sbjct 14011 TTCTTTTTGGATGTTGTAGTCGGAGAGGGTTCTTCCATCTTCCAATTGTTTTCCGGCGAA 14070 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 |||||| | ||||||||| ||||| || ||||||||||||||||| || || ||| | Sbjct 14071 GATCAATCTTTGTTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTT 14130 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || || || || |||||||||||||| | |||||| || || || |||||||| || || Sbjct 14131 CTCAATGGTATCAGAAGCTTCGACTTCCAAAGTGATGGTTTTTCCAGTCAAAGTTTTGAC 14190 Query 283088 GAATATCTGCATT 283100 || || |||||| Sbjct 14191 AAAGATTTGCATT 14203 Score = 150 bits (166), Expect = 4e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 282882 AGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGG 282941 || ||||| |||| || | ||| |||||||||||||||||||| | || || | Sbjct 13529 AGACGAAGGACCAAGTGGAGGGTGGACTCTTTTTGGATGTTGTAGTCGGAGAGAGTTCTT 13588 Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001 ||||| || | |||||| |||||||| ||||| | ||||||||| ||||| || || Sbjct 13589 CCATCTTCCAATTGTTTTCCGGCAAAAATCAATCTTTGTTGGTCTGGTGGAATTCCTTCT 13648 Query 283002 TTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTG 283061 || ||||| || |||||||| || | || || |||||||||||||| ||||| | ||| Sbjct 13649 TTATCTTGAATTTTTGCTTTGACATTTTCAATTGTGTCCGAAGCTTCAACTTCCAATGTG 13708 Query 283062 ATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || || ||||| || || || || || ||||| Sbjct 13709 ATGGTTTTTCCAGTCAATGTTTTGACAAAGATTTGCAT 13746 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 282882 AGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGG 282941 || ||||| |||| || | || ||||||||| ||||||||||| | || || | Sbjct 12208 AGACGAAGAACCAAGTGGAGTGTTGATTCTTTTTGAATGTTGTAGTCGGAGAGGGTTCTT 12267 Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001 || || || | |||||| ||||| |||||||| | ||||||||| || || || || Sbjct 12268 CCGTCTTCCAATTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGGATTCCTTCT 12327 Query 283002 TTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTG 283061 |||||||| || || ||||| || | ||||| || || ||||| || ||||| || ||| Sbjct 12328 TTGTCTTGAATTTTAGCTTTGACATTTTCGATGGTATCAGAAGCCTCAACTTCAAGGGTG 12387 Query 283062 ATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| || |||||||| || || || || ||||| Sbjct 12388 ATGGTCTTTCCGGTCAAAGTTTTGACAAAGATTTGCAT 12425 Score = 140 bits (154), Expect = 7e-28 Identities = 146/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| ||||| || || || || | ||| || | |||||| || | |||||| ||||| || Sbjct 13046 TTCCTTTTGAATATTATAATCCGAAAGGGTTCTGCCATCTTCCAATTGTTTTCCGGCGAA 13105 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 |||||| | ||||||||| ||||| || || |||||||||||||| || || || | Sbjct 13106 GATCAATCTTTGTTGGTCTGGTGGAATTCCTTCTTTGTCTTGGATCTTGGCCTTGACATT 13165 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || || ||||| |||||||||||||| | ||||| || || || || | ||||| || Sbjct 13166 TTCAATGGTGTCAGAAGCTTCGACTTCCAAGGTGATAGTTTTGCCGGTGAGGGTCTTGAC 13225 Query 283088 GAATATCTGCAT 283099 ||| || ||||| Sbjct 13226 GAAAATTTGCAT 13237 Score = 132 bits (146), Expect = 1e-25 Identities = 114/141 (81%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 |||||||||||||| | ||||||||| ||||| || ||||||||||||||||| ||| Sbjct 12568 CCGGCAAAGATCAATCTTTGTTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATCTTGGCT 12627 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || ||| | ||||| ||||| |||||||| ||||| | ||||| || || || || | | Sbjct 12628 TTGACGTTTTCGATGGTGTCAGAAGCTTCAACTTCCAATGTGATGGTTTTTCCGGTGAGA 12687 Query 283080 GTCTTAACGAATATCTGCATT 283100 ||||| ||||| || |||||| Sbjct 12688 GTCTTGACGAAGATTTGCATT 12708 Score = 129 bits (142), Expect = 1e-24 Identities = 113/141 (80%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || || |||||||| | ||||||||| || || || ||||||||||||||||| ||| Sbjct 13379 CCAGCGAAGATCAATCTTTGTTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCT 13438 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || | ||||| ||||| |||||||||||||| | |||||| || || || |||||| Sbjct 13439 TTGACATTTTCGATGGTGTCAGAAGCTTCGACTTCCAAAGTGATGGTTTTTCCGGTCAAA 13498 Query 283080 GTCTTAACGAATATCTGCATT 283100 || || ||||| || |||||| Sbjct 13499 GTTTTGACGAAGATTTGCATT 13519 Score = 104 bits (114), Expect = 5e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || || ||||| | |||||||||||| ||||| || || |||||||| ||||| ||| Sbjct 14410 CCTGCGAAGATGAGACGTTGTTGGTCTGGTGGAATTCCTTCTTTGTCTTGAATCTTGGCT 14469 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || | ||||| || || |||||||||||||| || ||||| ||||| || || | Sbjct 14470 TTCACATTTTCGATGGTATCAGAAGCTTCGACTTCAAGTGTGATGGTCTTTCCGGTAAGT 14529 Query 283080 GTCTTAACGAATATCTGCAT 283099 || || || || || ||||| Sbjct 14530 GTTTTGACAAAAATTTGCAT 14549 >seq16010 Length=816 Score = 150 bits (166), Expect = 4e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 282882 AGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGG 282941 || ||||| |||| ||| | || ||| |||||||||||||| |||| ||| || | Sbjct 147 AGACGAAGAACCAAATGGAGTGTTGATTCCTTTTGGATGTTGTAATCAGAAAGAGTTCTT 206 Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001 ||||| || | |||||| |||||||| ||||| | |||||| | || || || || Sbjct 207 CCATCTTCCAATTGTTTTCCGGCAAAAATCAATCTTTGTTGATGTGGTGGGATTCCTTCG 266 Query 283002 TTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTG 283061 || ||||| || |||||||| || | || || ||||| ||||||||||||||||| ||| Sbjct 267 TTATCTTGAATTTTTGCTTTGACATTTTCAATTGTGTCGGAAGCTTCGACTTCGAGTGTG 326 Query 283062 ATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || || ||||| || || |||| || ||||| Sbjct 327 ATAGTTTTTCCAGTCAATGTTTTGACGACGATTTGCAT 364 Score = 95.1 bits (104), Expect = 3e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 282966 AAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACG 283025 || ||||| | |||||| || || || || |||||||| |||||||| ||||| || Sbjct 3 AAAATCAATCTTTGTTGATCTGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCTTTGACA 62 Query 283026 GTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTA 283085 | || || ||||| ||||||||||||||||| ||||| || || || || | || || Sbjct 63 TTTTCAATGGTGTCGGAAGCTTCGACTTCGAGGGTGATGGTTTTTCCGGTAAGTGTTTTG 122 Query 283086 ACGAATATCTGCATT 283100 ||||| || || ||| Sbjct 123 ACGAAGATTTGAATT 137 >seq2100 Length=124 Score = 96.9 bits (106), Expect = 7e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 282963 GCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTT 283022 || || || | ||||||||| || || || |||||||||||||||||||| ||||| Sbjct 124 GCGAAAATGAGACGTTGTTGATCTGGTGGGATTCCCTCCTTGTCTTGGATCTTGGCTTTG 65 Query 283023 ACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 || | ||||| ||||| |||||||||||||| | |||||| || || || || Sbjct 64 ACATTTTCGATGGTGTCGGAAGCTTCGACTTCCAAAGTGATGGTTTTTCCGGT 12 >seq26738 Length=103 Score = 95.1 bits (104), Expect = 3e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 282990 GGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCG 283049 || || || ||||||||||||||||| ||||| || | ||||| ||||| ||||||||| Sbjct 7 GGGATTCCTTCCTTGTCTTGGATCTTGGCTTTGACATTTTCGATGGTGTCAGAAGCTTCG 66 Query 283050 ACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTT 283084 ||||| | |||||| || || || |||||||| || Sbjct 67 ACTTCCAAAGTGATGGTTTTTCCGGTCAAAGTTTT 101 >seq16908 Length=1629 Score = 84.2 bits (92), Expect = 5e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 301430 TGGACCCCTATATCAACGTCGATCCGGGGACGATGAGCCCGACTCAACATGGAGAAGTGT 301489 |||| || || |||||||||||||||| ||||||| |||| || || || || || | Sbjct 1558 TGGATCCGTACCTCAACGTCGATCCGGGCACGATGAACCCGTTCCAGCACGGCGAGGTCT 1499 Query 301490 TCGTGACGGATGATGGTGCTGAAACCGATCTGGATCTGGGGCACTACGAACGTTTC 301545 |||| || || || || ||||| || || || || | ||||||||||| || ||| Sbjct 1498 TCGTCACCGACGACGGCGCTGAGACGGACCTCGACATCGGGCACTACGAGCGGTTC 1443 >seq5494 Length=143 Score = 84.2 bits (92), Expect = 5e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 283002 TTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTG 283061 |||||||||||||| || || || | || || ||||| |||||||| ||||| | |||| Sbjct 143 TTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCAGAAGCTTCAACTTCCAAAGTG 84 Query 283062 ATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || || || || || | |||||| ||||| || |||||| Sbjct 83 ATGGTTTTTCCGGTGAGAGTCTTGACGAAGATTTGCATT 45 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046289128639586