Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq32583 215 5e-51 >seq32583 Length=15821 Score = 215 bits (238), Expect = 5e-51 Identities = 381/550 (69%), Gaps = 4/550 (1%) Strand=Plus/Plus Query 23343 ATCTGCTACAAATTCAATATATTGACACATCAAATC-ATAGTTTATACCTATTAGTTTTA 23401 ||| || |||||||| |||||||| |||| || || | | || ||||| || | | | Sbjct 6689 ATCAGCAACAAATTCGATATATTGTGACAT-AAGTCGACAATTCATACCAATCATATCAA 6747 Query 23402 CTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCTTTAATTATTTGAA 23461 | || | || ||| |||||| || ||| || || || |||||||| || |||| | Sbjct 6748 CAGGCAAAGCCTCAGTCAAGAATTCTTGTTCGATTGAGACGGCATCTTTGATAATTTCAT 6807 Query 23462 CAATAACTTCTTCACTAGGTGGATATTTTAAATACTTAA-ACAATAAACATGCAAAATCA 23520 || ||||| || | || ||| || | || |||| | ||| || |||||| Sbjct 6808 AGATTCGTTCTTGGCTCAATTTAT-TTTGAAGCATCGAATACAAAAGACAAGCGAAATCA 6866 Query 23521 CAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAAT 23580 | || || ||||| || || ||| | ||||| ||| || ||||||||||| ||| Sbjct 6867 CGGTGAAGTCCTTCGTCTCTTGAAATGAGCTCATTTGAATGAGTCAATCCTGGCATCAAT 6926 Query 23581 CCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACA 23640 |||| ||||| | ||| || |||| |||||||| ||||| ||||| || || || ||| Sbjct 6927 CCTCTCTTTTTCAACCAGAAAATTGAGGCAAATGAGCCGGAGAAGAATATTCCTTCGACA 6986 Query 23641 GCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGAAATCCAttttttt 23700 || ||||| || | | | | | |||||| |||||| | ||||||||||||||| Sbjct 6987 GCAGCAAATGCAATTAATCTTTCAGCAAATGATGCATTTTTATCAGAAATCCATTTCAAG 7046 Query 23701 GTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTTTAAGAGAAAAGTT 23760 | ||||| ||||||| ||| | | || | | |||||| || || || || | Sbjct 7047 GCCCAATCAGCCTTCTTTTTGATGAATTCGAATTCGAAAATTGCATTGAAAAGTGAATGT 7106 Query 23761 TTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATA 23820 |||||| | ||| ||||| || ||||| | | ||||||||| |||||||| Sbjct 7107 CTTTCTTGTTCATCGCGAATATAAGTTTCAATCAATTTTGAATACATTTCTGAATGAATG 7166 Query 23821 TTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACATCATTA 23880 |||||||| ||||| || || |||||||| ||| ||||| || | || || ||||| Sbjct 7167 TTTTCAATTGCAATTTGGAATCCATAAAAGAATCGGGCTTCTGAGACTTTGACTTCATTC 7226 Query 23881 AAAAATCTTT 23890 | ||||||| Sbjct 7227 GAGAATCTTT 7236 Score = 93.3 bits (102), Expect = 4e-14 Identities = 77/94 (82%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 23204 TCATAACACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCT 23263 |||||||||| | |||||||||| ||||||| | ||||| |||||||| || || | Sbjct 6475 TCATAACACCAGGTCTTTGATATTCGGAAACACGTTTCTCGAAGAAATTTGTTTTTCCGT 6534 Query 23264 CTAATGATATATTTTCCATAAAATCAAATGGATT 23297 | | ||||||||||||||| ||||| |||||||| Sbjct 6535 CGATTGATATATTTTCCATGAAATCGAATGGATT 6568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521269242302600