Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq13386 179 9e-40 seq30935 168 2e-36 seq16010 165 2e-35 seq971 95.1 3e-14 seq2100 89.7 1e-12 >seq13386 Length=19191 Score = 179 bits (198), Expect = 9e-40 Identities = 171/219 (78%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || ||||| || ||||| |||||| | || || ||| || ||| Sbjct 13234 CAAATTTTCGTCAAGACCCTCACCGGCAAAACTATCACCTTGGAAGTCGAAGCTTCTGAC 13175 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| ||||| || |||||||||||||| || || ||||| ||| Sbjct 13174 ACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGAATTCCACCAGACCAACAA 13115 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||||||||| | |||||||| || || ||| | |||||||| | Sbjct 13114 AGATTGATCTTCGCCGGAAAACAATTGGAAGATGGCAGAACCCTTTCGGATTATAATATT 13055 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||| ||||||||||| || | ||||||||| | ||| Sbjct 13054 CAAAAGGAATCAACACTCCACTTGGTTTTGAGATTGAGA 13016 Score = 179 bits (198), Expect = 9e-40 Identities = 171/219 (78%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || |||||| | || |||||||| ||||| | || || ||| || || Sbjct 14199 CAAATCTTTGTCAAAACTTTGACTGGAAAAACCATCACTTTGGAAGTCGAAGCTTCTGAT 14140 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||||||||| ||||| || ||||| |||||||| || || ||||| ||| Sbjct 14139 ACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCACCAGACCAACAA 14080 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||||||||| | ||||||||||| || || |||| || ||| || Sbjct 14079 AGATTGATCTTCGCCGGAAAACAATTGGAAGATGGAAGAACCCTCTCCGACTACAACATC 14020 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||||||||||||||| || | ||||||||| | ||| Sbjct 14019 CAAAAAGAATCAACACTTCACTTGGTTTTGAGATTGAGA 13981 Score = 176 bits (194), Expect = 1e-38 Identities = 163/207 (79%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || ||||| || ||||| |||||| | || || ||| ||| ||| Sbjct 12194 CAAATTTTCGTCAAGACCCTCACCGGCAAAACCATCACCTTGGAAGTCGAAGCCTCTGAC 12135 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| || ||||| ||||||||||| || || || ||| Sbjct 12134 ACCATCGAAAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGATCAACAA 12075 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||||||||| | |||||||| | ||||| |||| || ||| || Sbjct 12074 CGTCTCATCTTCGCCGGAAAACAATTGGAAGATGGTCGCACTCTCTCCGACTACAACATC 12015 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 ||||| ||||| || || ||| | ||| Sbjct 12014 CAAAAGGAATCGACTCTTCATTTGGTT 11988 Score = 170 bits (188), Expect = 5e-37 Identities = 169/219 (77%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || |||||| | || ||||| || |||||||| || || || || || Sbjct 12422 CAAATCTTTGTCAAAACTTTGACCGGAAAGACCATCACCCTTGAAGTTGAGGCTTCTGAT 12363 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || |||||| || ||||| ||||||||||||||||| || ||||| ||| Sbjct 12362 ACCATCGAAAATGTCAAAGCTAAAATTCAAGACAAAGAAGGAATCCCACCAGACCAACAA 12303 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||||||||| | ||||| ||||| || || |||| || ||| | Sbjct 12302 AGATTGATCTTCGCCGGAAAACAATTGGAAGACGGAAGAACCCTCTCCGACTACAACATT 12243 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||||||||||||||| || | ||| | | |||||| Sbjct 12242 CAAAAAGAATCAACACTCCACTTGGTTCTTCGTCTCAGA 12204 Score = 156 bits (172), Expect = 1e-32 Identities = 160/208 (77%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||| |||||||| ||||| || || || ||| || ||| Sbjct 13971 CAAATCTTCGTCAAGACACTCACTGGAAAAACAATCACACTTGAAGTTGAAGCTTCTGAC 13912 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || |||||| ||||| || ||||| ||||||||||| || || || ||| Sbjct 13911 ACCATCGAAAATGTCAAAGCTAAGATCCAAGACAAGGAAGGAATCCCACCAGATCAACAA 13852 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || || ||||||||||| | ||||||||| | || | | ||||| ||| || Sbjct 13851 CGTCTCATTTTTGCCGGAAAACAATTGGAAGATGGACGCACATTGTCTGATTACAACATC 13792 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 ||||| ||||| || || || |||| || Sbjct 13791 CAAAAGGAATCTACCCTTCA-CTTGGTT 13765 Score = 145 bits (160), Expect = 2e-29 Identities = 156/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || ||||| | || |||||||| ||||| | || || ||| || ||| Sbjct 13743 CAAATCTTTGTCAAAACATTGACTGGAAAAACCATCACATTGGAAGTTGAAGCTTCGGAC 13684 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || |||||| ||| ||||| || ||||||||||| || || ||||| ||| Sbjct 13683 ACAATTGAAAATGTCAAAGCAAAAATTCAAGATAAAGAAGGAATTCCACCAGACCAACAA 13624 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || ||||||||||| | ||||||||||| ||||| |||| || ||| || Sbjct 13623 AGATTGATTTTTGCCGGAAAACAATTGGAAGATGGAAGAACTCTCTCCGACTACAACATC 13564 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 |||||||| || || || || |||| Sbjct 13563 CAAAAAGAGTCCACCCTCCA-CTTG 13540 Score = 116 bits (128), Expect = 9e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || |||||||| |||||||| ||||| | || || ||| || ||| Sbjct 12704 CAAATCTTCGTCAAGACTCTCACCGGAAAAACCATCACATTGGAAGTTGAAGCTTCTGAC 12645 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||||||| ||||| || ||||| |||||||| || || ||||| ||| Sbjct 12644 ACCATCGAAAACGTCAAAGCCAAGATCCAAGACAAGGAAGGAATTCCACCAGACCAACAA 12585 Query 178044 CGACTTATCTTCGCCGG 178060 || | ||||| ||||| Sbjct 12584 AGATTGATCTTTGCCGG 12568 Score = 113 bits (124), Expect = 1e-19 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| |||||| | || |||||||| ||||| | || || ||| || ||| Sbjct 13515 CAAATCTTCGTCAAAACTTTGACCGGAAAAACCATCACTTTGGAAGTCGAAGCTTCTGAC 13456 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || |||||| ||||| || ||||| ||||||||||| || ||||| ||| Sbjct 13455 ACCATCGAAAATGTCAAAGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGACCAACAA 13396 Query 178044 CGACTTATCTTCGCCGG 178060 || | |||||||| || Sbjct 13395 AGATTGATCTTCGCTGG 13379 Score = 113 bits (124), Expect = 1e-19 Identities = 112/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 177916 AAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAA 177975 |||| | |||||||| || ||||| || || ||||| || ||||| || || || ||| Sbjct 14554 AAATCATGCAAATTTTTGTCAAAACACTTACCGGAAAGACCATCACACTTGAAGTCGAAG 14495 Query 177976 GCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGG 178035 || || |||||||| || || ||| |||||||| |||||||||||||| || || | Sbjct 14494 CTTCTGATACCATCGAAAATGTGAAAGCCAAGATTCAAGACAAAGAAGGAATTCCACCAG 14435 Query 178036 ACCAGCAACGACTTATCTTCGCCGG 178060 |||| ||||| || |||||||| || Sbjct 14434 ACCAACAACGTCTCATCTTCGCAGG 14410 >seq30935 Length=6295 Score = 168 bits (186), Expect = 2e-36 Identities = 163/208 (78%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || ||||| || || || || || |||||||| || || ||| ||| Sbjct 1271 CAAATCTTCGTCAAGACTCTGACGGGTAAGACAATTACCCTCGAAGTCGAGGCCTCGGAC 1330 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || |||||| ||||| || ||||| ||||||||||| || || || ||| Sbjct 1331 ACCATCGAAAATGTCAAAGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGATCAACAA 1390 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||||||||| ||||| |||||| | |||||| |||| || ||| || Sbjct 1391 AGATTGATCTTCGCCGGAAAACAACTCGAGGATGGACGTACTCTTTCCGACTACAACATC 1450 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 ||||| || || || || || |||| || Sbjct 1451 CAAAAGGAGTCGACCCTTCA-CTTGGTT 1477 >seq16010 Length=816 Score = 165 bits (182), Expect = 2e-35 Identities = 168/219 (77%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||| ||||| | || |||||||| ||||| ||||| || ||| || ||| Sbjct 361 CAAATCGTCGTCAAAACATTGACTGGAAAAACTATCACACTCGAAGTCGAAGCTTCCGAC 302 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || |||||| ||| ||||| || || ||||||||||| || | || ||| Sbjct 301 ACAATTGAAAATGTCAAAGCAAAAATTCAAGATAACGAAGGAATCCCACCACATCAACAA 242 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || ||||||||||| | ||||||||||| |||||| | ||||| ||| || Sbjct 241 AGATTGATTTTTGCCGGAAAACAATTGGAAGATGGAAGAACTCTTTCTGATTACAACATC 182 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||| ||||||||||| ||| | ||| | | |||||| Sbjct 181 CAAAAGGAATCAACACTCCATTTGGTTCTTCGTCTCAGA 143 Score = 114 bits (126), Expect = 3e-20 Identities = 105/133 (79%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| ||||| || || |||||||| ||||||||||| || ||| || ||| Sbjct 133 CAAATCTTCGTCAAAACACTTACCGGAAAAACCATCACCCTCGAAGTCGAAGCTTCCGAC 74 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || |||||| ||||| |||||||| ||||||||||| || || || ||| Sbjct 73 ACCATTGAAAATGTCAAAGCCAAGATCCAGGACAAGGAAGGAATCCCACCAGATCAACAA 14 Query 178044 CGACTTATCTTCG 178056 || | || |||| Sbjct 13 AGATTGATTTTCG 1 >seq971 Length=9908 Score = 95.1 bits (104), Expect = 3e-14 Identities = 368/576 (64%), Gaps = 2/576 (0%) Strand=Plus/Minus Query 254351 AGTCTTTGGTCGAAAAGGTCAGATTCCAAAAGTTTTGTTTTGAACTCTGCCGCTCCCGCG 254410 |||||||| ||||| | ||||||| ||||| || ||||| || || || || Sbjct 4471 AGTCTTTGATCGAACATATCAGATTGTCCAAGTTCAGTCTTGAAATCAGCACTACCAGCC 4412 Query 254411 ATAACAATTCCGAGGACGTTGCATTTGTTGTCTTGTATGAAGCATTGGGTTGCGTTCTCT 254470 | || | || |||| || ||||| || || ||||| || | ||||| || Sbjct 4411 AAAATGAGACCTCCGACGGTGACTTTGTCGTTTTTGATGAACATTTCGACCGCGTTTTCA 4352 Query 254471 GCGACTTTTCTCAAATAGTTGTGTCTTTTTTCTTTTCGAAGTCTTTCGAACCGGAGGGCT 254530 || |||||||||| || |||||||||||||| || ||||| | | || || | || Sbjct 4351 GCTACTTTTCTCACGTAATTGTGTCTTTTTTCATTACGAAGACGAGCAAAACGAACAGCA 4292 Query 254531 GACTGTCCTCCTCGACCGTGTTTCTTTGGGAGAGACACATCAAAAGACAAAAGCGTTGTC 254590 || || ||||||| |||||| |||||||| | | ||| || ||| | Sbjct 4291 GATTGACCTCCTCTACCGTGCTTCTTTGGCAAATCGACAGTGAATTTGTGAAGAACTTCA 4232 Query 254591 CTTGTGCTTCCAGAAAGAGTCGCAAAGAGAGCCCCTGAGCCATCCACAATAATAAAGCCG 254650 | || |||| ||| || | || | | || ||||||| |||||| || ||| Sbjct 4231 CGAGTATTTCCTTGAAGTGTTCCGAACAAACAACCGTTTCCATCCATAATAATGAAACCG 4172 Query 254651 TATGTTTTGTCGTCGTACAAAAGCTCTTTGAGACAATCCGTGTGAAAGACATTATCACAA 254710 | | ||||| || ||| | ||| | | || ||||| || || || ||| Sbjct 4171 AACTTGTTGTCATCAGCCAATAATCCTTGCAAAGCTTCAGTGTGGAATTTGTTGTCGCAA 4112 Query 254711 GCGTACACTTTTTGGCTTATCGGACGGAAAGGTTCGACGTCGAATGCCACTTTCTTCTCT 254770 ||||| | | || | |||||| || | |||| ||||||||| ||| Sbjct 4111 AGGTACAAAGAAGTGTTGATGGCTTTGAAAGGCTCAAAATCGATATTCACTTTCTTTTCT 4052 Query 254771 TTGCCTTCAGGAAGCATCACTGTCCCACTAAAAATAACGAGGCCGTTTTCGGGGACTTTC 254830 || |||||| | ||| | ||| |||| | | | || || || ||| || ||||| Sbjct 4051 TTTCCTTCATCAGTCATAATTGTTCCACAATACACGACAAGTCCATTTGGTGGAACTTTG 3992 Query 254831 GACAAGAGTTTTAGCTTTTGCTGGCA-TGAAACAATTGCCCCAAGAACGGAGAGCCTGTT 254889 | | ||| || | || || | | ||| || || || | |||||| |||||||| Sbjct 3991 TTATACAATTTCAG-TCTTCCTTGTACAGAAGTGATAGCTCCCAAAACGGAAAGCCTGTT 3933 Query 254890 TACCCTCGACTTGATATTCGATGCCGTTCCGTGTTC 254925 || | ||| || |||||||| || ||||||| ||| Sbjct 3932 GACTCGCGATTTAATATTCGAAGCAGTTCCGTATTC 3897 >seq2100 Length=124 Score = 89.7 bits (98), Expect = 1e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 177936 AAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAAC 177995 ||||| || || |||||||| ||||| | || || ||| || ||||||||||| || Sbjct 3 AAAACACTTACCGGAAAAACCATCACTTTGGAAGTCGAAGCTTCCGACACCATCGAAAAT 62 Query 177996 GTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTC 178055 |||||| ||||| || ||||| || |||||||| || || || ||||| || || ||| Sbjct 63 GTCAAAGCCAAGATCCAAGACAAGGAGGGAATCCCACCAGATCAACAACGTCTCATTTTC 122 Query 178056 GC 178057 || Sbjct 123 GC 124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203213626053446