Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq196 84.2 2e-11 >seq196 Length=138734 Score = 84.2 bits (92), Expect = 2e-11 Identities = 217/327 (66%), Gaps = 8/327 (2%) Strand=Plus/Minus Query 16675 TTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTC 16734 |||||| ||| || |||||||| |||||||| | || ||||| | || ||||| || Sbjct 135315 TTGGTACTCGGATACTCGTTTTTCAAAAAAGTTTGCCTTTCCCTCCATTGAAATATTTTC 135256 Query 16735 CATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAA 16794 ||| ||||||||||| || || | | | | ||| || | || ||||| ||| || Sbjct 135255 CATAAAATCAAAAGGGTTGGTCTCGTCATACAATTTTGAAAATCCAAGTTCTACGAGTAG 135196 Query 16795 TCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACG 16854 ||| || ||| | || |||| ||| || | | |||||| || ||| ||| Sbjct 135195 GTGATCAGCAACATAACGAATGTATTTCTTCATCAAATATCTGTTCATGCCAATA--ACG 135138 Query 16855 T--ACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATA 16912 | || |||||||| || |||||||| ||| || ||| || || | ||||| Sbjct 135137 TTGACAGGAAGAGCCTCAGTCAAAAAATCCAACTCGATCGAAACAGCCTCATCGATAATG 135078 Query 16913 CTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTT--TAAACATCAGACATGCGA 16970 | ||||||| || || ||| || || | || || ||||| || || || | Sbjct 135077 TCAAACACTCGTTTCTGAGATGGTTTA--TTAACAATCTTGGAAAACAAGAGGCACGCAA 135020 Query 16971 AATCGCAATGTAATCCCTCGTCTCTGC 16997 |||| | ||| | ||||| ||||||| Sbjct 135019 AATCACGATGAAGACCCTCATCTCTGC 134993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517524218897400