Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq17 181 1e-40 >seq17 Length=1338299 Score = 181 bits (200), Expect = 1e-40 Identities = 484/736 (66%), Gaps = 14/736 (2%) Strand=Plus/Plus Query 53938 TGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGG 53997 |||||| | | |||||||| |||||||| || || | ||| || || || || Sbjct 168002 TGTATAGAGTTTCTCAAACTCCTCTCCCCAGCAATCATCGAGTCCTGGGCACTCGCATGG 168061 Query 53998 ACACATCAACGACCACTCTCCGTCATCCTTC---ACTCGTTTCATAAAGAGATCAGGAAT 54054 |||||||||||||| ||| | ||||||| || |||||||| |||||||| |||| Sbjct 168062 GCACATCAACGACCAATCT---TGATCCTTCTCGACACGTTTCATGAAGAGATCTGGAAC 168118 Query 54055 CCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAG 54114 ||| || || | || | || | | | | ||| || || || || || || Sbjct 168119 CCAGAGGGCAAGGAACAAGTCACGAGCGCGCTCTTCTTCTGGGCCAGTGTTTTTGCGGAG 168178 Query 54115 ATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGG 54174 | ||| |||| | | | || | ||||| || || | || || | | | || || Sbjct 168179 AGCGACGAACTCGAAGACGTCGGCGTGCCATGGCTCAAGATAGATAGCGAATGCACCTGG 168238 Query 54175 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 54234 || ||||||||||| ||||| | || | ||| ||||| || ||||| | | |||||| Sbjct 168239 ACGCTTGTTTCCTCCTTGATCGACATAACGAGCAGTGTTGTTGTAAACACGGAGCATTGG 168298 Query 54235 AATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATT 54294 ||||| |||||||| | |||||||| |||| ||| ||| |||||||||| || Sbjct 168299 AATAAGTCCATTGGAAGTTCCATTGGTTCCGGCGATGACTGATCCGGTGGCACGAATCTT 168358 Query 54295 ----ACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTA 54350 || |||| ||||| || || || || | || ||||| | ||| || |||| | Sbjct 168359 GTGGAC--ATTG--AGACCAATTCCTCCAGCACTCTTCGAGATGAGTGCACACTGTTTCA 168414 Query 54351 ACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACA 54410 || || ||||| || || ||| || |||| | || | || || |||| Sbjct 168415 GAGTGTCGTAGATTCCGAGAATCGAATCTTCGCTCATCGTGAGCAAGAAGCACGATGACA 168474 Query 54411 TTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTT 54470 | || |||||| ||||| | || || | || || || || || || | | || Sbjct 168475 TCTGTGGACGACACGTTCCAGAGTTGAAGAGAGTTGGTGATGCATGTGTCATGTACCGTT 168534 Query 54471 CAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTG 54530 | || | | |||||| || ||||| || | | || || | |||||||| | | Sbjct 168535 CCGACATCAAATTGTATGTTTCGATGGCGGCAGCAATGTCATTTCCGTGAATTCCGATAG 168594 Query 54531 CGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGT 54590 |||||||||| ||||| |||||||| | ||||| | | ||||| || || || | || Sbjct 168595 CGACACGCATCAACATTTGCTGAGGACGCTCAACAACTTCTTTGTTAATCTTGAGAAGGT 168654 Query 54591 AGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAA 54650 |||| || | || || || || || || |||| ||| |||| || ||||| | | Sbjct 168655 AGGACCGCTCGAGTGTCTTGAATCCGAAGTAAGTGTAGGAATAGTCACGATCGTACACGA 168714 Query 54651 TAACTGAGTTGAGTTT 54666 | | |||||||| || Sbjct 168715 TTGCGGAGTTGAGCTT 168730 Score = 122 bits (134), Expect = 1e-22 Identities = 289/436 (66%), Gaps = 3/436 (1%) Strand=Plus/Plus Query 52829 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 52888 || || || ||||| | ||||||||||| || || || || |||||||||| || Sbjct 166603 GCTGGCTTAGTACGCAAGTAGTACATTCCAGTCTTGAGTCCCTTCTTCCATCCGTAGAAG 166662 Query 52889 TGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 52948 ||||| || | || || || || | || || || || || | |||||| | Sbjct 166663 TGCATTGAGGTGATACCGGCGTAGCTTGGTTTGGCCATGTGAATGTTGAGTGATTGAGAT 166722 Query 52949 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 53008 ||||||||||| ||||| | || |||||||| | || ||| ||| |||| || ||| Sbjct 166723 TGATCGATGAATGCTCCACGATCAGCAGCCATCTCGATAATCTCCTTCTGTGAGATCTCC 166782 Query 53009 CAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATAGAT 53065 || | || || | | ||| || || ||||| | || | || ||||| ||| Sbjct 166783 CATACTGTGCGGTAGAGTTCCTTGATGTCATCTGGGATTCCTGGGATGTTTTGAATGGAT 166842 Query 53066 CCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAA 53125 ||| | | || | || ||||| |||||||| ||| ||| ||||||| ||| Sbjct 166843 CCATTGTTGGCAATGAGTCTGTTCTTCATCTCATCGGACCACAATCCTCTCTCGACCAAA 166902 Query 53126 ACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAA 53185 | | || | || ||||| || | || || || || || | || | || | ||| Sbjct 166903 TCCTTGAGCATGTGTGGATTCACAATCTGGAAGTCACCGGAGAGCACACGTCGGGAGTAG 166962 Query 53186 ATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCA 53245 ||||| || || || || | ||| || || ||||| | ||||||||| || || ||| Sbjct 166963 ATATTGGATGTGTATGGCTCAATAGATTCGTTGTTTCCAAGAATTTGAGCGGTGGAAGCA 167022 Query 53246 GTCGGCATAGGTGCCA 53261 || ||||| ||||||| Sbjct 167023 GTTGGCATCGGTGCCA 167038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593697071876400