Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq24 82.4 6e-11 seq19 82.4 6e-11 >seq24 Length=791117 Score = 82.4 bits (90), Expect = 6e-11 Identities = 101/136 (74%), Gaps = 4/136 (3%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||| ||||| | || ||| || |||||||| ||||| || || || |||||||| Sbjct 463943 GATAAGGAAGGAATCCCACCAGACCAGCAAAGACTCATCTTCGCCGGAAAGCAATTGGAG 463884 Query 25188 GAT--TCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGT 25245 ||| || | || | |||| || || |||||||||||||||||||||||| |||| Sbjct 463883 GATGGTCGCACCCTCT--CCGACTATAACATTCAAAAGGAATCTACTCTTCACTTGGTCC 463826 Query 25246 TACGATTACGAGGAGG 25261 | || | || ||||| Sbjct 463825 TTCGTCTTCGTGGAGG 463810 >seq19 Length=917137 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||| |||| || ||||| || || ||||| ||| ||| ||| || | Sbjct 764787 ATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACCATCACCTTGGAAGTCGAAGCCTCC 764728 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | ||||| || || || || ||||| | || ||| || Sbjct 764727 GACACCATTGAAAACGTCAAGGCTAAGATCCAAGACAAGGAAGGAATCCCACCAGACCAG 764668 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 |||||||| ||||| || || || |||||||| ||| | ||| | |||||||||| Sbjct 764667 CAAAGACTCATCTTCGCCGGAAAGCAATTGGAGGATGGCCGCACTCTCTCCGATTACAAC 764608 Query 25215 ATTCAAAAGGAATCTACTCTTCA 25237 || ||||||||||| || ||||| Sbjct 764607 ATCCAAAAGGAATCCACCCTTCA 764585 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||||| || ||| |||| || | || || || ||||| ||| ||| ||| || | Sbjct 765755 AATGCAGATCTTCGTCAAGACCCTCACTGGAAAGACCATCACCTTGGAAGTCGAAGCCTC 765696 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | | ||||| ||||| || || || || | || |||||| Sbjct 765695 CGACACCATTGAAAACGTCAAGGCTAAAATCCAAGACAAGGAGGGAATTCCACCAGATCA 765636 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||| | || ||||| || || || |||||||| ||| | |||| | | |||||||| Sbjct 765635 GCAACGTCTCATCTTCGCTGGAAAGCAATTGGAGGATGGAAGAACTCTTTCGGATTACAA 765576 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||| |||||||| || |||||||| ||||| | || | || ||||| Sbjct 765575 TATCCAAAAGGAGTCCACTCTTCATTTGGTGCTCCGTCTTCGTGGAGG 765528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410780253233270