Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq19 143 2e-29 seq24 84.2 2e-11 >seq19 Length=917137 Score = 143 bits (158), Expect = 2e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||| |||||||||||||||||| || ||||| ||||||| Sbjct 766283 ACCAAGTGAAGAGTCGACTCCTTTTGAATGTTGTAATCGGACAAGGTGCGGCCATCCTCG 766342 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||||||||| ||| ||||||| | ||||| || || || || || ||||||||| Sbjct 766343 AGCTGTTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGG 766402 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || |||||| | |||| |||||| | |||||| || | || | || || Sbjct 766403 ATCTTGGCTTTAACATTCTCGATGGTGTCAGAAGCCTCGACTTCAAGTGTGATAGTCTTT 766462 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| ||||| || ||||| |||||||| Sbjct 766463 CCGGTGAGAGTCTTGACAAAGATCTGCAT 766491 Score = 134 bits (148), Expect = 1e-26 Identities = 158/211 (75%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 |||||| |||| || ||||| |||||||||||||| || || ||||| |||||| Sbjct 766054 CACCAAATGGAGAGTCGACTCCTTTTGAATGTTGTAGTCAGACAATGTGCGTCCATCCTC 766113 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | ||| ||||| ||| ||||||| | ||||||||| || || || |||||||||||| Sbjct 766114 CAACTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGGATTCCCTCCTTGTCTTG 766173 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTT 118707 ||| || ||| || | ||||| ||||| | ||| ||||| || | || | || | Sbjct 766174 AATCTTGGCTTTGACATTTTCGATTGTGTCGGAAGCT-TCGACTTCAAGTGTGATAGTCT 766232 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | ||||| ||||| || ||||| |||||||| Sbjct 766233 TTCCGGTGAGAGTCTTGACAAAGATCTGCAT 766263 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | |||||||| || || ||||| || ||| || ||||| ||||||| Sbjct 764807 ACCAAGTGAAGGGTAGACTCCTTCTGGATGTTATAGTCGGACAAGGTGCGGCCATCCTCG 764866 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| ||||| ||| |||| | |||||| ||||| || || || |||||||||||| Sbjct 764867 AGCTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGTGGGATTCCCTCCTTGTCTTGG 764926 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| | | ||||| || | ||| | || || Sbjct 764927 ATCTTGGCCTTGACGTTCTCGATGGTGTCGGAGGCTTCGACTTCCAAGGTGATGGTCTTT 764986 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || || || || |||||||| Sbjct 764987 CCGGTGAGGGTCTTCACGAAGATCTGCAT 765015 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| || ||||| || || |||||||| || | ||| | |||||| Sbjct 764351 ACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTTCTTCCATCCTCC 764410 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | || ||||||||| |||||||||| |||||||| || || || |||||||||||| | Sbjct 764411 AATTGCTTTCCAGCGAAGATGAGACGTTGCTGATCTGGTGGGATTCCCTCCTTGTCTTGA 764470 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | ||| | |||||| | ||| || |||| ||| | || || Sbjct 764471 ATCTTGGCCTTCACGTTTTCAATGGTGTCGGAAGCCTCAACTTCGAGGGTGATGGTCTTT 764530 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| || || || || |||||||| Sbjct 764531 CCAGTCAAGGTCTTGACGAAGATCTGCAT 764559 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| || | | | |||||| || | || ||||| ||||| || |||||||| Sbjct 765526 TACCTCCACGAAGACGGAGCACCAAATGAAGAGTGGACTCCTTTTGGATATTGTAATCCG 765585 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||| | |||||| | || ||||||||| |||||||||| |||||||| || | Sbjct 765586 AAAGAGTTCTTCCATCCTCCAATTGCTTTCCAGCGAAGATGAGACGTTGCTGATCTGGTG 765645 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || |||||||||||| ||||| || || | ||| | |||||| | | |||| Sbjct 765646 GAATTCCCTCCTTGTCTTGGATTTTAGCCTTGACGTTTTCAATGGTGTCGGAGGCTTCGA 765705 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | ||| | || || || || || || || || || |||||||| Sbjct 765706 CTTCCAAGGTGATGGTCTTTCCAGTGAGGGTCTTGACGAAGATCTGCAT 765754 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| || ||||| || || ||||| || ||| || ||||| |||||||||||| Sbjct 763848 TGGAGGGTCGACTCCTTCTGGATGTTATAGTCGGACAAGGTGCGGCCATCCTCGAGCTGC 763907 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 ||||| ||| |||| | |||||| ||||| || || || |||||||||||| || || Sbjct 763908 TTTCCGGCGAAGATCAAACGCTGTTGATCTGGTGGGATTCCCTCCTTGTCTTGGATCTTG 763967 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 || || | |||| |||||| | | ||||| || | ||| | || || ||||| Sbjct 763968 GCCTTGACGTTCTCGATGGTGTCGGAGGCTTCGACTTCCAAGGTGATGGTCTTTCCGGTG 764027 Query 118716 AGAGTTTTTACAAAAATCTGCAT 118738 || || || || || |||||||| Sbjct 764028 AGGGTCTTCACGAAGATCTGCAT 764050 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 |||||||| || || |||||||| || || ||| || |||||||||||| ||||| Sbjct 766523 GTAGACTCCTTCTGGATGTTGTAGTCAGACAGAGTCCGTCCATCCTCGAGCTGCTTTCCG 766582 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||||||||| || || || || || || |||||||| || || || || Sbjct 766583 GCGAAGATGAGACGTTGTTGGTCTGGTGGAATTCCCTCCTTATCCTGGATCTTGGCCTTG 766642 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| |||||| | ||| ||||| | ||| | ||||| || |||| ||| Sbjct 766643 ACATTCTCGATGGTGTCGGAAGCCTCCACCTCCAGGGTGATGGTTTTTCCAGTCAACGTT 766702 Query 118722 TTTACAAAAATCTGCATG 118739 || || || || |||||| Sbjct 766703 TTGACGAAGATTTGCATG 766720 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || || ||||| |||||||||||| | |||||| |||||| | || ||||| Sbjct 764591 GTGGATTCCTTTTGGATGTTGTAATCGGAGAGAGTGCGGCCATCCTCCAATTGCTTTCCG 764650 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| ||||||| | ||||| || || || || || ||||||||| || || || Sbjct 764651 GCGAAGATGAGTCTTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATCTTAGCCTTG 764710 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | ||| | |||||| | | ||||| || | ||| | || || ||||||| ||| Sbjct 764711 ACGTTTTCAATGGTGTCGGAGGCTTCGACTTCCAAGGTGATGGTCTTTCCGGTCAAAGTC 764770 Query 118722 TTTACAAAAATCTGCAT 118738 || || || |||||||| Sbjct 764771 TTGACGAAGATCTGCAT 764787 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | ||||| || ||||||||||| || ||| | ||||| |||||| Sbjct 765318 ACCAAGTGAAGGGTAGATTCCTTTTGAATGTTATAGTCGGAGAGGGTGCGACCATCCTCC 765377 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | || ||||||||| |||| | | ||||| || || || || || ||||| || Sbjct 765378 AATTGCTTTCCAGCGAAGATCAATCTTTGCTGGTCTGGTGGGATTCCTTCCTTATCCTGG 765437 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | ||| || | | |||||||||| || | || || Sbjct 765438 ATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGCTTCGACCTCGAGAGTGATAGTCTTT 765497 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || ||||| || || ||||||||||| Sbjct 765498 CCAGTGAGAGTCTTGACGAAAATCTGCAT 765526 >seq24 Length=791117 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | ||||| || ||||||||||| || ||| | ||||| |||||| Sbjct 463199 ACCAAGTGAAGGGTAGATTCCTTTTGAATGTTATAGTCGGAGAGGGTGCGACCATCCTCC 463258 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | || ||||| ||| ||||||| | ||||| || || || || || ||||| || Sbjct 463259 AATTGCTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGGATTCCTTCCTTATCCTGG 463318 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | || | ||| || | |||| |||| |||| || | || || Sbjct 463319 ATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGCTC-CGACTTCGAGAGTGATAGTCTT 463377 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || ||||| || || ||||||||||| Sbjct 463378 TCCAGTGAGAGTCTTGACGAAAATCTGCAT 463407 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | ||||| || ||||||||||| || ||| | ||||| |||||| Sbjct 463828 ACCAAGTGAAGAGTAGATTCCTTTTGAATGTTATAGTCGGAGAGGGTGCGACCATCCTCC 463887 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | || ||||| ||| ||||||| | ||||| || || || || || ||||| || Sbjct 463888 AATTGCTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGGATTCCTTCCTTATCCTGG 463947 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | || | ||| || | |||| |||| |||| || | || || Sbjct 463948 ATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGCTC-CGACTTCGAGAGTGATAGTCTT 464006 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || ||||| || || ||||||||||| Sbjct 464007 TCCAGTGAGAGTCTTGACGAAAATCTGCAT 464036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433812925447060