Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq19 93.3 6e-14 >seq19 Length=917137 Score = 93.3 bits (102), Expect = 6e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||| | ||| || || || ||||| ||||| ||||||||||| | ||| || Sbjct 765546 ACCAAATGAAGAGTGGACTCCTTTTGGATATTGTAATCCGAAAGAGTTCTTCCATCCTCC 765605 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||| |||||||| || || | | ||||||||| || |||||||| || || ||||| Sbjct 765606 AATTGCTTTCCAGCGAAGATGAGACGTTGCTGATCTGGTGGAATTCCCTCCTTGTCTTG 765664 Score = 87.8 bits (96), Expect = 3e-12 Identities = 93/120 (78%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATC 146127 ||||| || | |||||||| ||| || || ||||| || || || || | | ||| || Sbjct 765318 ACCAAGTGAAGGGTAGATTCCTTTTGA-ATGTTATAGTCGGAGAGGGTGCGACCATCCTC 765376 Query 146128 TAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||| |||||||| || |||||||||||||| || || || |||||||| ||||| || Sbjct 765377 CAATTGCTTTCCAGCGAAGATCAATCTTTGCTGGTCTGGTGGGATTCCTTCCTTATCCTG 765436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743495683065600