Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq19 98.7 6e-16 >seq19 Length=917137 Score = 98.7 bits (108), Expect = 6e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| || | ||| || || || ||||||||||| |||| || | || Sbjct 766052 AGCACCAAATGGAGAGTCGACTCCTTTTGAATGTTGTAGTCAGACAATGTGCGTCCATCC 766111 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 ||||||||||| || ||||| ||||| | |||||| || || | | ||||||||| Sbjct 766112 TCCAACTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGGATTCCCTCCTTGTCT 766171 Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||||| | || | || | |||| | |||||| || | ||||| || Sbjct 766172 TGAATCTTG-GCTTTGACATTTTCGATTGTGTCGGAAGCTTCGACTTCAAGTGTGATAGT 766230 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || ||||||||||| || |||||||||||||| Sbjct 766231 CTTTCCGGTGAGAGTCTTGACAAAGATCTGCAT 766263 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACA-GCTGACGGTCGTC 34236 || |||| ||| | ||| || ||||| ||||| |||||||||| | || ||| | || Sbjct 764804 AGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTATAGTCGGACAAGGTG-CGGCCATC 764862 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 || | |||||| || ||||| || | ||||| || || || | | ||||||||| Sbjct 764863 CTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGTGGGATTCCCTCCTTGTC 764922 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||| | | | || | |||| | |||||| |||| |||||||| Sbjct 764923 TTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAGGCTTCGACTTCCAAGGTGATGGT 764982 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || |||||||| || ||||| ||||||||||| Sbjct 764983 CTTTCCGGTGAGGGTCTTCACGAAGATCTGCAT 765015 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACA-GCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 || ||||| ||||| |||||||||| | || ||| | || || | |||||| || ||||| Sbjct 763860 TCCTTCTGGATGTTATAGTCGGACAAGGTG-CGGCCATCCTCGAGCTGCTTTCCGGCGAA 763918 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 || | ||||| || || || | | ||||||||| ||||| ||| | | Sbjct 763919 GATCAAACGCTGTTGATCTGGTGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTT 763978 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | |||| | |||||| |||| |||||||| || |||||||| || ||||| Sbjct 763979 CTCGATGGTGTCGGAGGCTTCGACTTCCAAGGTGATGGTCTTTCCGGTGAGGGTCTTCAC 764038 Query 34378 AAAGATCTGCAT 34389 ||||||||||| Sbjct 764039 GAAGATCTGCAT 764050 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| || || |||||||| ||||| || ||| | || ||||| ||||| || ||||| Sbjct 764596 TTCCTTTTGGATGTTGTAATCGGAGAGAGTGCGGCCATCCTCCAATTGCTTTCCGGCGAA 764655 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 ||||| | |||||||| || | | |||||||| ||||| ||| | | Sbjct 764656 GATGAGTCTTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATCTTAGCCTTGACGTT 764715 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | |||| | |||||| |||| |||||||| || ||||| | ||| || || Sbjct 764716 TTCAATGGTGTCGGAGGCTTCGACTTCCAAGGTGATGGTCTTTCCGGTCAAAGTCTTGAC 764775 Query 34378 AAAGATCTGCAT 34389 ||||||||||| Sbjct 764776 GAAGATCTGCAT 764787 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| ||||| || | || || || || | |||| || ||||| ||||||||||| || Sbjct 766492 TCCTCCGCGGAGACGAAGAACGAGATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGA 766551 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 ||| || | || || | |||||| || ||||| ||||| || || ||||| || Sbjct 766552 CAGAGTCCGTCCATCCTCGAGCTGCTTTCCGGCGAAGATGAGACGTTGTTGGTCTGGTGG 766611 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | |||||| || ||||| ||| | || | || | |||| | || || Sbjct 766612 AATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCGGAAGCCTCCAC 766671 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||||||||||| || || | ||||| || ||||| ||||| Sbjct 766672 CTCCAGGGTGATGGTTTTTCCAGTCAACGTTTTGACGAAGATTTGCAT 766719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323058986760800