Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq196 84.2 2e-11 >seq196 Length=138734 Score = 84.2 bits (92), Expect = 2e-11 Identities = 230/349 (66%), Gaps = 4/349 (1%) Strand=Plus/Minus Query 14240 ATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATT 14299 |||||||| || || || | ||| ||||| | || || ||||| | |||||| || Sbjct 134945 ATAAGTTCATTAGAGTGAGTGAGTCCGGGCATGAGACCGCGCTTTTTCAGCCAAAAAATC 134886 Query 14300 GCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCT 14359 | || || |||||| ||| || || || || || |||||||| || | || ||||| Sbjct 134885 GAGGCAAACGATCCGCTAAAAAAGATCCCTTCGACAGCAGCAAATGCGACCAAACGTTCG 134826 Query 14360 CCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATA 14419 |||| | | | | ||| |||||| | ||||| |||| || || || ||| Sbjct 134825 GCAAAGTTCGTCTCCGTATCCGAAATCCATCGTAGGGCCCAATCAGCCTTCTTCTTGATA 134766 Query 14420 AAATCCATTGTTTCAATAGCATTAAATAA-ATGTTCCT-TCTCTTTAGTACTTGAAATGT 14477 || || | | ||||||| ||| || | | || || || | | ||||| || Sbjct 134765 AATTCAAACCCATTGATAGCATCAAACAAGACGCGCCGCTCGCTCTCATCCTTGATAT-- 134708 Query 14478 ATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAAC 14537 | || ||||| | | | |||| ||||||| || || || || | || || || |||| Sbjct 134707 AAGTCTCAATCAATTTGGCATACGTTTCAGAATGAATATTCTCAACTGCGATTTGGAAAC 134648 Query 14538 CATAAAAACATCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTC 14586 ||||||| ||| ||| |||| || ||||| | |||||| ||| Sbjct 134647 CATAAAAGAATCGAGCCTCTGTTAGTTTGACCTCGGTAGAAAATCGTTC 134599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482325673097400