Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq24 89.7 4e-13 seq19 84.2 2e-11 >seq24 Length=791117 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || || | ||| |||| |||||| || ||||| ||||||||||| ||||||| Sbjct 463181 CCTCCACGGAGACGAAGGACCAAGTGAAGGGTAGATTCCTTTTGAATGTTATAGTCGGAG 463240 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || ||| |||||||| || || || |||| |||||||| || || || Sbjct 463241 AGGGTGCGACCATCCTCCAATTGCTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGG 463300 Query 18219 ACGCCTTCCTTATC 18232 | ||||||||||| Sbjct 463301 ATTCCTTCCTTATC 463314 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || || | ||| |||| |||||| || ||||| ||||||||||| ||||||| Sbjct 463810 CCTCCACGAAGACGAAGGACCAAGTGAAGAGTAGATTCCTTTTGAATGTTATAGTCGGAG 463869 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || ||| |||||||| || || || |||| |||||||| || || || Sbjct 463870 AGGGTGCGACCATCCTCCAATTGCTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGG 463929 Query 18219 ACGCCTTCCTTATC 18232 | ||||||||||| Sbjct 463930 ATTCCTTCCTTATC 463943 >seq19 Length=917137 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || || | ||| |||| |||||| || ||||| ||||||||||| ||||||| Sbjct 765300 CCTCCACGAAGACGAAGGACCAAGTGAAGGGTAGATTCCTTTTGAATGTTATAGTCGGAG 765359 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || ||| |||||||| || || || |||| | |||||| || || || Sbjct 765360 AGGGTGCGACCATCCTCCAATTGCTTTCCAGCGAAGATCAATCTTTGCTGGTCTGGTGGG 765419 Query 18219 ACGCCTTCCTTATC 18232 | ||||||||||| Sbjct 765420 ATTCCTTCCTTATC 765433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379328720142225