Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq17 201 1e-46 seq202 107 2e-18 seq19 98.7 9e-16 seq24 89.7 5e-13 seq7 89.7 5e-13 seq157 82.4 7e-11 seq156 82.4 7e-11 >seq17 Length=1338299 Score = 201 bits (222), Expect = 1e-46 Identities = 435/647 (67%), Gaps = 3/647 (0%) Strand=Plus/Plus Query 23331 TTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTT 23390 |||| || || || || ||| |||| || ||||| || | ||| || || ||||| | Sbjct 168080 TTGA-TCCTTCTCGACACGTTTCATGAAGAGATCTGGAACCCAGAGGGCAAGGAACAAGT 168138 Query 23391 CGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGT 23450 | || |||||| | || ||| ||| ||||| || | | | | || || || |||| Sbjct 168139 CACGAGCGCGCTCTTCTTCTGGGCCAGTGTTTTTGCGGAGAGCGACGAACTCGAAGACGT 168198 Query 23451 CCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGAT 23510 | || ||||| ||||| || || | || || || || || | ||| || || || |||| Sbjct 168199 CGGCGTGCCATGGCTCAAGATAGATAGCGAATGCACCTGGACGCTTGTTTCCTCCTTGAT 168258 Query 23511 CGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGC 23570 |||| ||||| || ||||||||||| || | ||||| || | || || ||||| | | Sbjct 168259 CGACATAACGAGCAGTGTTGTTGTAAACACGGAGCATTGGAATAAGTCCATTGGAAGTTC 168318 Query 23571 CGCCTACGCCCGCCA-CACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATG 23629 | || || | ||| || || | || |||| ||||| || | || ||| || Sbjct 168319 CATTGGTTCCGGCGATGACT-GATCCGGTGGCACGAATCTTGTGGACATTGAGACCAATT 168377 Query 23630 CCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATG 23689 ||||| | ||||| || | || || |||||||||||||||||||| || || Sbjct 168378 CCTCCAGCACTCTTCGAGATGAGTGCACACTGTTTCAGAGTGTCGTAGATTCCGAGAATC 168437 Query 23690 CTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCC 23749 || || | ||| || |||||| ||||| ||||| || | ||| | | Sbjct 168438 GAATCTTCGCTCATCGTGAGCAAGAAGCACGATGACATCTGTGGACGACACGTTCCAGAG 168497 Query 23750 GAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCG 23809 ||| || || || || || || | ||| | | |||||| | |||||| || ||| Sbjct 168498 TTGAAGAGAGTTGGTGATGCATGTGTCATGTACCGTTCCGACATCAAATTGTATGTTTCG 168557 Query 23810 ATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGA 23869 ||||||||| ||||||| | |||||| || ||||| ||||| ||||||| ||| | ||| Sbjct 168558 ATGGCGGCAGCAATGTCATTTCCGTGAATTCCGATAGCGACACGCATCAACATTTGCTGA 168617 Query 23870 GGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAAT 23929 || | ||| || | |||||| |||| || || || || | | || || ||| Sbjct 168618 GGACGCTCAACAACTTCTTTGTTAATCTTGAGAAGGTAGGACCGCTCGAGTGTCTTGAAT 168677 Query 23930 CCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATT 23976 || || || ||| | |||||||||||| ||| || || || || Sbjct 168678 CCGAAGTAAGTGTAGGAATAGTCACGATCGTACACGATTGCGGAGTT 168724 >seq202 Length=205773 Score = 107 bits (118), Expect = 2e-18 Identities = 306/469 (65%), Gaps = 6/469 (1%) Strand=Plus/Minus Query 22106 TTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCC 22165 ||||| ||||| || || | ||||| | || || || | || | ||| ||||| || Sbjct 120732 TTGTCGACTGTGAATTGAACAGCGTTGACAGCGGGCTTAGAACGCAAATAGTACATTCCA 120673 Query 22166 GTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGC 22225 ||||| | ||| | ||||| ||| ||| | || || || | | | || || || Sbjct 120672 GTCTTAACTCCCTTTTTCCATCCGTGAAAGTACATTGAGGTGACACTGGCGTAGCTGGGT 120613 Query 22226 AAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCC 22285 |||||| | || | ||| ||| ||||| || || ||||| ||||| |||||| Sbjct 120612 TTTGCCATGTGAATGTTTAGCGATTGAGATTGATCAATGAATGCTCCACGATCAGCGGCC 120553 Query 22286 ATATTTATCAATGTACGCATC---GACATTTCCCATACGGTCTTGTACAGTTGCCTGATC 22342 || | || || | || || || ||||||||||| ||| | | | |||| Sbjct 120552 ATCTCGATG---GTTTCCTTCTGTGATATCTCCCATACGGTGCGGTAGAAATCCTTGATG 120496 Query 22343 TCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTA 22402 || || || | ||| | || | || ||||| || |||| || || Sbjct 120495 TCGTCAGGAATTCCTGCGAAGTTTTGAATAGATCCGTTGTTAGCGATGAGTGTGTTCTTC 120436 Query 22403 ATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACT 22462 ||| || | |||||| || | | ||||||| |||| || || | ||||| | Sbjct 120435 ATCTCATTGGACCACAATCCTCTCTCAATCAAATCCTTGAGCATGTGTGGATTCACAATC 120376 Query 22463 TGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGAT 22522 || || |||||||| | ||||| || ||| || || |||||| | || || | ||| Sbjct 120375 TGGAAGTCGCCGGAGAGCACGCGCCGAGAGTAGATATTCGATGTGTATGGCTCTATAGAC 120316 Query 22523 TCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCA 22571 || ||||| || || || |||||||| ||||| || ||||||||||||| Sbjct 120315 TCGTTGTTACCAAGAATTTGAGCGGTGGAAGCAGTTGGCATCGGCGCCA 120267 >seq19 Length=917137 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||| |||| || || || |||||| | || || ||| | ||| Sbjct 764787 ATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACCATCACCTTGGAAGTCGAAGCCTCC 764728 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| ||||| | || ||||||||||| | || || |||||| Sbjct 764727 GACACCATTGAAAACGTCAAGGCTAAGATCCAAGACAAGGAAGGAATCCCACCAGACCAG 764668 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | || || ||||| || || || ||||| || ||| | |||||| ||| Sbjct 764667 CAAAGACTCATCTTCGCCGGAAAGCAATTGGAGGATGGCCGCACTCTCTCCGATTACAAC 764608 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || ||||| ||||| || |||||||| || || Sbjct 764607 ATCCAAAAGGAATCCACCCTTCATCTCGTCCT 764576 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || |||||||| || || || || ||||| | || || ||| | ||| Sbjct 766263 ATGCAGATCTTTGTCAAGACTCTCACCGGAAAGACTATCACACTTGAAGTCGAAGCTTCC 766204 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||||| |||||| | || |||||||| || | || || || ||| Sbjct 766203 GACACAATCGAAAATGTCAAAGCCAAGATTCAAGACAAGGAGGGAATCCCACCAGATCAG 766144 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 ||| | || || ||||| || || |||||||| || | | | || || || || || Sbjct 766143 CAGAGACTCATCTTCGCCGGAAAGCAGTTGGAGGA-TGGACGCACATTGTCTGACTACAA 766085 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||||||| || |||||||| ||| |||| || Sbjct 766084 CATTCAAAAGGAGTCGACTCTCCATTTGGTGCT 766052 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| |||||||| || || || || ||||| |||| || ||| | || Sbjct 765526 ATGCAGATTTTCGTCAAGACTCTCACTGGAAAGACTATCACTCTCGAGGTCGAAGCCTCT 765467 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | || || | || ||| |||||||| | || || |||||| Sbjct 765466 GATACCATTGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGAATCCCACCAGACCAG 765407 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | | || |||||||| || || ||||| || | || | ||| |||||| Sbjct 765406 CAAAGATTGATCTTCGCTGGAAAGCAATTGGAGGATGGTCGCACCCTCTCCGACTATAAC 765347 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||| ||||| || ||||| |||| ||| | || | || |||| Sbjct 765346 ATTCAAAAGGAATCTACCCTTCACTTGGTCCTTCGTCTTCGTGGAGGTA 765298 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || |||||||| || || || || ||||| | || || || | || Sbjct 766491 ATGCAGATCTTTGTCAAGACTCTCACCGGAAAGACTATCACACTTGAAGTCGAGGCTTCT 766432 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || ||| | || ||||||||||| | || || |||||| Sbjct 766431 GACACCATCGAGAATGTTAAAGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGACCAG 766372 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | || || ||||| || |||||| | || || || || |||||| ||| Sbjct 766371 CAAAGACTCATCTTCGCCGGAAAACAGCTCGAGGATGGCCGCACCTTGTCCGATTACAAC 766312 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||||| || ||||||||||| |||| ||| | || || || || Sbjct 766311 ATTCAAAAGGAGTCGACTCTTCACTTGGTCCTTCGTCTCAGAGGAGG 766265 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| || || |||| || ||||| |||||| | || || || | || Sbjct 766720 CATGCAAATCTTCGTCAAAACGTTGACTGGAAAAACCATCACCCTGGAGGTGGAGGCTTC 766661 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| |||| | ||||| | || ||| ||||| || | || || ||||| Sbjct 766660 CGACACCATCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGAATTCCACCAGACCA 766601 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 || ||||| || ||||| || || ||| | || || |||| || || || || Sbjct 766600 ACAACGTCTCATCTTCGCCGGAAAGCAGCTCGAGGATGGACGGACTCTGTCTGACTACAA 766541 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||| || || || || ||||||||||| || ||| Sbjct 766540 CATCCAGAAGGAGTCTACTCTTCATCTCGTTCTT 766507 >seq24 Length=791117 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| |||||||| || || || || ||||| |||| || | | | || Sbjct 464036 ATGCAGATTTTCGTCAAGACTCTCACTGGAAAGACTATCACTCTCGAAGTCGGAGCCTCT 463977 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | || || | || ||| |||||||| | || || |||||| Sbjct 463976 GATACCATTGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGAATCCCACCAGACCAG 463917 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | || || ||||| || || || ||||| || | || | ||| |||||| Sbjct 463916 CAAAGACTCATCTTCGCCGGAAAGCAATTGGAGGATGGTCGCACCCTCTCCGACTATAAC 463857 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||| ||||| |||||||| |||| ||| | || | || |||| Sbjct 463856 ATTCAAAAGGAATCTACTCTTCACTTGGTCCTTCGTCTTCGTGGAGGTA 463808 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| |||||||| || || || || ||||| |||| || | | | || Sbjct 463407 ATGCAGATTTTCGTCAAGACTCTCACTGGAAAGACTATCACTCTCGAAGTCGGAGCCTCT 463348 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | || || | || ||| |||||||| | || || |||||| Sbjct 463347 GATACCATTGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGAATCCCACCAGACCAG 463288 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | || || ||||| || || || ||||| || | || | ||| |||||| Sbjct 463287 CAAAGACTCATCTTCGCCGGAAAGCAATTGGAGGATGGTCGCACCCTCTCCGACTATAAC 463228 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 |||||||| ||||| || ||||| |||| ||| Sbjct 463227 ATTCAAAAGGAATCTACCCTTCACTTGGTCCTT 463195 >seq7 Length=1891389 Score = 89.7 bits (98), Expect = 5e-13 Identities = 203/303 (67%), Gaps = 8/303 (3%) Strand=Plus/Minus Query 58095 GACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCG 58154 ||||| || |||||| |||||| || ||||| ||||||| || || || | Sbjct 174231 GACGAAGGACTCCATCGTGATTTCGCATGCCTTTTGTACTCCATGCTTCAGAACAAGCTC 174172 Query 58155 ACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTC 58214 || | || ||||||| || || |||| ||| || ||| ||||| | ||||| || Sbjct 174171 ACTCAAGAGCGCATCTACGAGATCATCAGCGACGCCGTCAAAATCGAGCAGGAGTTCCTC 174112 Query 58215 ACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATT 58274 ||||| || || || || | |||| |||| |||||| | | | ||||| |||||||| Sbjct 174111 ACCGAGGCACTTCCAGTCGACATGATCGGAATGAACTGTCGTCTCATGTCGCAGTACATT 174052 Query 58275 GAGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGGAGAGCGTCA----TTACAACAC 58330 ||||| || || || | ||||||| | | ||| ||| || | ||| Sbjct 174051 GAGTTCGTCGCGGA---TCACTTGCTCGCCGAGCTCGGA-TGCGACAAGTTGTTCAAGGT 173996 Query 58331 GAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGA 58390 ||| || || || || || ||| | ||||| |||| || ||||| ||||| ||||| Sbjct 173995 GAAGAACCCATTCGACTTCATGGAGAACATCTCCATCGATGGAAAGACCAACTTCTTCGA 173936 Query 58391 AAA 58393 || Sbjct 173935 GAA 173933 >seq157 Length=243809 Score = 82.4 bits (90), Expect = 7e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| ||||||||||| || || || || ||| |||| || || | || Sbjct 217986 CATGCAAATCTTCGTCAAGACTCTGACGGGTAAGACTATTACCCTCGAAGTCGAGGCCTC 218045 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | |||| | ||||| | || ||||||||||| | || || || || Sbjct 218046 CGATACCATCGAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATTCCACCAGATCA 218105 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370 ||| | || || ||||| || || || | || || | | | ||| | ||| || | Sbjct 218106 GCAAAGACTGATCTTCGCCGGAAAGCAACTCGAGGA-TGGACGTACTCTCTCCGACTACA 218164 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||| ||||| || |||||||| || |||| || Sbjct 218165 ACATCCAAAAGGAGTCGACTCTCCACTTGGTTCT 218198 >seq156 Length=445966 Score = 82.4 bits (90), Expect = 7e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| ||||||||||| || || || || ||| |||| || || | || Sbjct 424561 CATGCAAATCTTCGTCAAGACTCTGACGGGTAAGACTATTACCCTCGAAGTCGAGGCCTC 424502 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | |||| | ||||| | || ||||||||||| | || || || || Sbjct 424501 CGATACCATCGAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATTCCACCAGATCA 424442 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370 ||| | || || ||||| || || || | || || | | | ||| | ||| || | Sbjct 424441 GCAAAGACTGATCTTCGCCGGAAAGCAACTCGAGGA-TGGACGTACTCTCTCCGACTACA 424383 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||| ||||| || |||||||| || |||| || Sbjct 424382 ACATCCAAAAGGAGTCGACTCTCCACTTGGTTCT 424349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445747984275600