Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq17 176 6e-39 seq196 89.7 6e-13 >seq17 Length=1338299 Score = 176 bits (194), Expect = 6e-39 Identities = 475/723 (66%), Gaps = 14/723 (2%) Strand=Plus/Plus Query 63189 TCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGAC 63248 || ||||| |||||||| || || | || || || || || |||||||||||| Sbjct 168015 TCAAACTCCTCTCCCCAGCAATCATCGAGTCCTGGGCACTCGCATGGGCACATCAACGAC 168074 Query 63249 CACTCTCCGTCATCCTTC---ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 63305 || ||| | ||||||| || |||||||| |||||||| |||| ||| || || | Sbjct 168075 CAATCT---TGATCCTTCTCGACACGTTTCATGAAGAGATCTGGAACCCAGAGGGCAAGG 168131 Query 63306 AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 63365 || | || | | | | ||| || || || || || ||| ||| |||| | Sbjct 168132 AACAAGTCACGAGCGCGCTCTTCTTCTGGGCCAGTGTTTTTGCGGAGAGCGACGAACTCG 168191 Query 63366 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 63425 | | || | ||||| || || | || || || | | || || || ||||||||| Sbjct 168192 AAGACGTCGGCGTGCCATGGCTCAAGATAGATAGCGAATGCACCTGGACGCTTGTTTCCT 168251 Query 63426 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTT 63485 || ||||| | || | ||| ||||| || ||||| | | ||||||||||| || || Sbjct 168252 CCTTGATCGACATAACGAGCAGTGTTGTTGTAAACACGGAGCATTGGAATAAGTCCATTG 168311 Query 63486 GATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATT----ACTAATTGA 63541 || | |||||||| |||| ||| ||| |||||||||| || || ||||| Sbjct 168312 GAAGTTCCATTGGTTCCGGCGATGACTGATCCGGTGGCACGAATCTTGTGGAC--ATTGA 168369 Query 63542 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63601 |||| ||||| || || | || ||||| | ||| || |||| | ||||| ||||| Sbjct 168370 --GACCAATTCCTCCAGCACTCTTCGAGATGAGTGCACACTGTTTCAGAGTGTCGTAGAT 168427 Query 63602 GCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGT 63661 || || ||| ||| |||| | || | || || ||||| || ||||| Sbjct 168428 TCCGAGAATCGAATCTTCGCTCATCGTGAGCAAGAAGCACGATGACATCTGTGGACGACA 168487 Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 ||||| | || || | || || || || || || | | ||| || | | ||| Sbjct 168488 CGTTCCAGAGTTGAAGAGAGTTGGTGATGCATGTGTCATGTACCGTTCCGACATCAAATT 168547 Query 63722 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63781 ||| || || || || | | || || | |||||||| | ||||||||||| || Sbjct 168548 GTATGTTTCGATGGCGGCAGCAATGTCATTTCCGTGAATTCCGATAGCGACACGCATCAA 168607 Query 63782 CATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63841 ||| |||||||| | ||||||| || ||||| || || | | |||||| || | Sbjct 168608 CATTTGCTGAGGACGCTCAACAACTTCTTTGTTAATCTTGAGAAGGTAGGACCGCTCGAG 168667 Query 63842 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAG 63901 || || || || || || |||| ||| |||| || ||||| | || | || ||||| Sbjct 168668 TGTCTTGAATCCGAAGTAAGTGTAGGAATAGTCACGATCGTACACGATTGCGGAGTTGAG 168727 Query 63902 CTT 63904 ||| Sbjct 168728 CTT 168730 Score = 122 bits (134), Expect = 1e-22 Identities = 289/436 (66%), Gaps = 3/436 (1%) Strand=Plus/Plus Query 62067 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 62126 || || || ||||| | ||||||||||| || || || || |||||||||| || Sbjct 166603 GCTGGCTTAGTACGCAAGTAGTACATTCCAGTCTTGAGTCCCTTCTTCCATCCGTAGAAG 166662 Query 62127 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 62186 ||||| || | || || || || | || || || || || | |||||| | Sbjct 166663 TGCATTGAGGTGATACCGGCGTAGCTTGGTTTGGCCATGTGAATGTTGAGTGATTGAGAT 166722 Query 62187 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCC 62246 ||||||||||| ||||| | || |||||||| | || ||| ||| |||| || ||| Sbjct 166723 TGATCGATGAATGCTCCACGATCAGCAGCCATCTCGATAATCTCCTTCTGTGAGATCTCC 166782 Query 62247 CAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATGGAT 62303 || | || || | | ||| || || ||||| | || | || ||||||||| Sbjct 166783 CATACTGTGCGGTAGAGTTCCTTGATGTCATCTGGGATTCCTGGGATGTTTTGAATGGAT 166842 Query 62304 CCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAA 62363 ||| | | || | || ||||| |||||||| ||| ||| ||||||| ||| Sbjct 166843 CCATTGTTGGCAATGAGTCTGTTCTTCATCTCATCGGACCACAATCCTCTCTCGACCAAA 166902 Query 62364 ACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAA 62423 | | || | || || || || | ||||| || || || | || | || | ||| Sbjct 166903 TCCTTGAGCATGTGTGGATTCACAATCTGGAAGTCACCGGAGAGCACACGTCGGGAGTAG 166962 Query 62424 ATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCA 62483 ||||| || || || || | || || || ||||| | ||||||||| || || ||| Sbjct 166963 ATATTGGATGTGTATGGCTCAATAGATTCGTTGTTTCCAAGAATTTGAGCGGTGGAAGCA 167022 Query 62484 GTCGGCATAGGTGCCA 62499 || ||||| ||||||| Sbjct 167023 GTTGGCATCGGTGCCA 167038 >seq196 Length=138734 Score = 89.7 bits (98), Expect = 6e-13 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 33623 TTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGC 33682 ||| ||||| |||||||||||||| || || |||||||| |||||||| || || || Sbjct 134940 TTCATTAGAGTGAGTGAGTCCGGGCATGAGACCGCGCTTTTTCAGCCAAAAAATCGAGGC 134881 Query 33683 GAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33724 || |||||| ||| ||||| ||||| || |||||||| || Sbjct 134880 AAACGATCCGCTAAAAAAGATCCCTTCGACAGCAGCAAATGC 134839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629791580660400