Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq17 178 2e-39 >seq17 Length=1338299 Score = 178 bits (196), Expect = 2e-39 Identities = 483/736 (66%), Gaps = 14/736 (2%) Strand=Plus/Plus Query 65969 TGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGG 66028 |||||| | | || ||||| |||||||| || || | ||| || || || || Sbjct 168002 TGTATAGAGTTTCTCAAACTCCTCTCCCCAGCAATCATCGAGTCCTGGGCACTCGCATGG 168061 Query 66029 ACACATCAACGACCACTCTCCGTCATCCTTC---ACTCGTTTCATAAAGAGATCAGGAAT 66085 |||||||||||||| ||| | ||||||| || |||||||| |||||||| |||| Sbjct 168062 GCACATCAACGACCAATCT---TGATCCTTCTCGACACGTTTCATGAAGAGATCTGGAAC 168118 Query 66086 CCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAG 66145 ||| || || | || || || | | | | ||| || || || || || || Sbjct 168119 CCAGAGGGCAAGGAACAAGTCACGAGCGCGCTCTTCTTCTGGGCCAGTGTTTTTGCGGAG 168178 Query 66146 ATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGG 66205 | ||| |||| | | | || ||||| || || | || || || | | || || Sbjct 168179 AGCGACGAACTCGAAGACGTCGGCGTGCCATGGCTCAAGATAGATAGCGAATGCACCTGG 168238 Query 66206 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 66265 || ||||||||||| ||||| | || | ||| ||||| || ||||| | | |||||| Sbjct 168239 ACGCTTGTTTCCTCCTTGATCGACATAACGAGCAGTGTTGTTGTAAACACGGAGCATTGG 168298 Query 66266 AATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATT 66325 ||||| |||||||| || |||||||| |||| ||| ||| | |||||||| || Sbjct 168299 AATAAGTCCATTGGAAGTTCCATTGGTTCCGGCGATGACTGATCCGGTGGCACGAATCTT 168358 Query 66326 ----ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTA 66381 || |||| ||||| ||||| || || | || ||||| | ||| || |||| | Sbjct 168359 GTGGAC--ATTG--AGACCAATTCCTCCAGCACTCTTCGAGATGAGTGCACACTGTTTCA 168414 Query 66382 ACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACA 66441 || || ||||| || || ||| || |||| | || | || || |||| Sbjct 168415 GAGTGTCGTAGATTCCGAGAATCGAATCTTCGCTCATCGTGAGCAAGAAGCACGATGACA 168474 Query 66442 TTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTT 66501 | || |||||| ||||| | || || | || || || || || || | | || Sbjct 168475 TCTGTGGACGACACGTTCCAGAGTTGAAGAGAGTTGGTGATGCATGTGTCATGTACCGTT 168534 Query 66502 CAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTG 66561 | || | | |||||| || || || || | | || || | |||||||| | | Sbjct 168535 CCGACATCAAATTGTATGTTTCGATGGCGGCAGCAATGTCATTTCCGTGAATTCCGATAG 168594 Query 66562 CGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGT 66621 |||||||||| ||||| |||||||| | ||||| | | ||||| || || | | || Sbjct 168595 CGACACGCATCAACATTTGCTGAGGACGCTCAACAACTTCTTTGTTAATCTTGAGAAGGT 168654 Query 66622 AGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAA 66681 |||| || | || || || || || || |||| ||| |||| || ||||| | | Sbjct 168655 AGGACCGCTCGAGTGTCTTGAATCCGAAGTAAGTGTAGGAATAGTCACGATCGTACACGA 168714 Query 66682 TAACCGAGTTGAGTTT 66697 | | |||||||| || Sbjct 168715 TTGCGGAGTTGAGCTT 168730 Score = 131 bits (144), Expect = 2e-25 Identities = 291/436 (67%), Gaps = 3/436 (1%) Strand=Plus/Plus Query 64860 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 64919 || || || ||||| | ||||||||||| || || || || |||||||||| || Sbjct 166603 GCTGGCTTAGTACGCAAGTAGTACATTCCAGTCTTGAGTCCCTTCTTCCATCCGTAGAAG 166662 Query 64920 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 64979 ||||| || | || || || || | || || || || || | |||||| | Sbjct 166663 TGCATTGAGGTGATACCGGCGTAGCTTGGTTTGGCCATGTGAATGTTGAGTGATTGAGAT 166722 Query 64980 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 65039 ||||||||||| ||||| | || |||||||| | || ||| ||| |||| || ||| Sbjct 166723 TGATCGATGAATGCTCCACGATCAGCAGCCATCTCGATAATCTCCTTCTGTGAGATCTCC 166782 Query 65040 CAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATGGAT 65096 || | || || | | ||| || || ||||| | || | || ||||||||| Sbjct 166783 CATACTGTGCGGTAGAGTTCCTTGATGTCATCTGGGATTCCTGGGATGTTTTGAATGGAT 166842 Query 65097 CCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAA 65156 ||| | || || | || ||||| |||||||| ||| ||| ||||||| ||| Sbjct 166843 CCATTGTTGGCAATGAGTCTGTTCTTCATCTCATCGGACCACAATCCTCTCTCGACCAAA 166902 Query 65157 ACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAA 65216 | | || | || ||||| || | || || || || || | || | || | ||| Sbjct 166903 TCCTTGAGCATGTGTGGATTCACAATCTGGAAGTCACCGGAGAGCACACGTCGGGAGTAG 166962 Query 65217 ATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCA 65276 ||||| || || || || | ||| || || ||||| | ||||||||| || || ||| Sbjct 166963 ATATTGGATGTGTATGGCTCAATAGATTCGTTGTTTCCAAGAATTTGAGCGGTGGAAGCA 167022 Query 65277 GTCGGCATAGGTGCCA 65292 || ||||| ||||||| Sbjct 167023 GTTGGCATCGGTGCCA 167038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658145609236200