Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq11 109 5e-19 seq441 91.5 1e-13 >seq11 Length=2072269 Score = 109 bits (120), Expect = 5e-19 Identities = 295/448 (66%), Gaps = 10/448 (2%) Strand=Plus/Minus Query 21075 CTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACACAAAACGTGA 21134 ||||| || || || || || ||||| || |||| ||||||||||||| |||| Sbjct 203994 CTCTGATAAAGTTGACACGAGAGCTCTCCATTCTCCACATAAAACTGACACATCGTGTGA 203935 Query 21135 CAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACATAACGATGCGC 21194 || || || | ||||| | | | |||| || ||||||||| |||| | ||| ||| Sbjct 203934 CACGGTGGCAACACCATCTGACCCAAATCCGACGGATTCCACGCGGACATGATGATTCGC 203875 Query 21195 CGATCGTGGGGCCGCCTGTTAATTAGATCCACCACGTAACGCAGCTGGTCCACCCCCTGA 21254 || || |||| | || ||| | | ||| | ||||| || || |||||| Sbjct 203874 CGGCTGTCGGGCTCCTCCTTGATTTGTCGGATCACTTCGGCGAGCTGATCGACACCCTGA 203815 Query 21255 CCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATGTCTCCACTGGAACCCG 21314 || ||||| | || || ||| | ||| || |||||||||||||| || ||| Sbjct 203814 CCGGTGTAGTCAGTGTGACAATCCACGTATTTCGCGCCGAAATGTCTCCACTGAAATCCG 203755 Query 21315 TACACCGGCCCCAGATCGCCCTCGCGGCGGTCCCCGAAGCCCTGCGCCGCCAAAAAGGCG 21374 || || ||||| || || ||||| ||| | ||| || | | | |||| | Sbjct 203754 TAGACTGGCCCGAGGTCACCCTCCTCGCGAGTCGTGAATCCGAGGTTGTCGAGGAAGGAG 203695 Query 21375 CGGGACCCGTGCGCGTCCCAAATTTTTAC----GCCGCGGCGCGACAGTTCGGTGGAGTC 21430 || |||| | |||||||||||||| ||| || | |||||| | ||| Sbjct 203694 CGATCGCCGTTCTTCTCCCAAATTTTTACATTTTTCGCCGC-CAACAGTT---TTCCGTC 203639 Query 21431 GGTGGAGCCCCTGATAAACCACAGCAACTCCTCCACGACGCCCCTCCAAAACACCCTTTT 21490 ||||||||| ||| ||||| |||| ||| || | || ||| ||||| | || | || Sbjct 203638 GGTGGAGCCGGAGATGAACCAGAGCAGCTCTTCGAGCACTCCCTTCCAATAGACACGCTT 203579 Query 21491 GGTGGTTAACAGAGGAAACTCGTCCCTG 21518 ||||| | ||| |||| |||| |||| Sbjct 203578 TGTGGTGAGCAGTGGAA--TCGTGCCTG 203553 >seq441 Length=99109 Score = 91.5 bits (100), Expect = 1e-13 Identities = 291/448 (65%), Gaps = 10/448 (2%) Strand=Plus/Plus Query 21075 CTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACACAAAACGTGA 21134 ||||| || || || || || ||||| || |||| ||||||||||||| ||| Sbjct 96400 CTCTGATAAAGTTGACACGAGAGCTCTCCATTCTCCACATAAAACTGACACATCGTATGA 96459 Query 21135 CAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACATAACGATGCGC 21194 || || || | ||||| | | | |||| || ||||||||| |||| | ||| ||| Sbjct 96460 CACGGTGGCAACACCATCTGACCCAAATCCGACGGATTCCACGCGGACATGATGATTCGC 96519 Query 21195 CGATCGTGGGGCCGCCTGTTAATTAGATCCACCACGTAACGCAGCTGGTCCACCCCCTGA 21254 || || |||| | || ||| | | ||| | ||||| || || |||||| Sbjct 96520 CGGCTGTCGGGCTCCTCCTTGATTTGTCGGATCACTTCGGCGAGCTGATCGACACCCTGA 96579 Query 21255 CCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATGTCTCCACTGGAACCCG 21314 || ||||| | || || ||| | ||| || |||||||||||||| || ||| Sbjct 96580 CCGGTGTAGTCTGTGTGACAATCCACGTATTTCGCTCCGAAATGTCTCCACTGAAATCCG 96639 Query 21315 TACACCGGCCCCAGATCGCCCTCGCGGCGGTCCCCGAAGCCCTGCGCCGCCAAAAAGGCG 21374 || || ||||| || || ||||| ||| || ||| || | | | |||| | Sbjct 96640 TAGACTGGCCCGAGGTCACCCTCCTCGCGAGCCGTGAATCCGAGATTGTCGAGGAAGGAG 96699 Query 21375 CGGGACCCGTGCGCGTCCCAAATTTTTAC----GCCGCGGCGCGACAGTTCGGTGGAGTC 21430 || |||| | ||||||||||| || ||| || | ||| | | ||| Sbjct 96700 CGATCGCCGTTCTTCTCCCAAATTTTCACATTTTTCGCCGC-CAACAACT---TTCCGTC 96755 Query 21431 GGTGGAGCCCCTGATAAACCACAGCAACTCCTCCACGACGCCCCTCCAAAACACCCTTTT 21490 ||||||||| ||| ||||| |||| ||| || | || ||| ||||| | || | || Sbjct 96756 GGTGGAGCCGGAGATGAACCAGAGCAGCTCTTCGAGCACTCCCTTCCAATAGACACGCTT 96815 Query 21491 GGTGGTTAACAGAGGAAACTCGTCCCTG 21518 ||||| | ||| || | |||| |||| Sbjct 96816 TGTGGTGAGCAGTGGGA--TCGTGCCTG 96841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427758769316400