Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq17 187 4e-42 seq196 89.7 7e-13 seq154 89.7 7e-13 >seq17 Length=1338299 Score = 187 bits (206), Expect = 4e-42 Identities = 485/736 (66%), Gaps = 14/736 (2%) Strand=Plus/Plus Query 79848 TGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGG 79907 |||||| | | || ||||| |||||||| ||| || | ||| || || ||| || Sbjct 168002 TGTATAGAGTTTCTCAAACTCCTCTCCCCAGCAATCATCGAGTCCTGGGCACTCGCATGG 168061 Query 79908 ACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCA 79967 |||||||||||||| ||| ||| | || || |||||||| |||||||| |||| ||| Sbjct 168062 GCACATCAACGACCAATCTTGATCCTTCTCGACACGTTTCATGAAGAGATCTGGAACCCA 168121 Query 79968 AAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTT---CCTGTATTCTTTTTAAG 80024 || || | || | || | | | |||| || | | || || || || || Sbjct 168122 GAGGGCAAGGAACAAGTCACGAGCGC---GCTCTTCTTCTGGGCCAGTGTTTTTGCGGAG 168178 Query 80025 ATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGG 80084 | ||| |||| | | | || | ||||| || || | || || || | | || || Sbjct 168179 AGCGACGAACTCGAAGACGTCGGCGTGCCATGGCTCAAGATAGATAGCGAATGCACCTGG 168238 Query 80085 TCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 80144 || ||||||||||| ||||| | || | ||| ||||| || ||||| | | |||||| Sbjct 168239 ACGCTTGTTTCCTCCTTGATCGACATAACGAGCAGTGTTGTTGTAAACACGGAGCATTGG 168298 Query 80145 AATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATT 80204 ||||| |||||||| || |||||||| |||| ||| ||| |||||||||| || Sbjct 168299 AATAAGTCCATTGGAAGTTCCATTGGTTCCGGCGATGACTGATCCGGTGGCACGAATCTT 168358 Query 80205 ----ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTA 80260 || |||| ||||| ||||| || || | || ||||| | ||| || |||| | Sbjct 168359 GTGGAC--ATTG--AGACCAATTCCTCCAGCACTCTTCGAGATGAGTGCACACTGTTTCA 168414 Query 80261 ACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACA 80320 || || ||||| || || ||| || |||| | || | || || |||| Sbjct 168415 GAGTGTCGTAGATTCCGAGAATCGAATCTTCGCTCATCGTGAGCAAGAAGCACGATGACA 168474 Query 80321 TTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTT 80380 | || |||||| ||||| | || || | || || || || || || | | || Sbjct 168475 TCTGTGGACGACACGTTCCAGAGTTGAAGAGAGTTGGTGATGCATGTGTCATGTACCGTT 168534 Query 80381 CAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCG 80440 | |||| | |||||| || || || || | | || || | |||||||| | | Sbjct 168535 CCGACATCAAATTGTATGTTTCGATGGCGGCAGCAATGTCATTTCCGTGAATTCCGATAG 168594 Query 80441 CGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGT 80500 |||||||||| ||||| |||||||| | ||||| | | || || || || | | || Sbjct 168595 CGACACGCATCAACATTTGCTGAGGACGCTCAACAACTTCTTTGTTAATCTTGAGAAGGT 168654 Query 80501 AAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAA 80560 | || || | || || || || || || |||| ||| |||| || ||||| | | Sbjct 168655 AGGACCGCTCGAGTGTCTTGAATCCGAAGTAAGTGTAGGAATAGTCACGATCGTACACGA 168714 Query 80561 TAACCGAGTTGAGTTT 80576 | | |||||||| || Sbjct 168715 TTGCGGAGTTGAGCTT 168730 Score = 136 bits (150), Expect = 6e-27 Identities = 292/436 (67%), Gaps = 3/436 (1%) Strand=Plus/Plus Query 78739 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAA 78798 || || || ||||| | ||||||||||| || || || || ||||||||||||| Sbjct 166603 GCTGGCTTAGTACGCAAGTAGTACATTCCAGTCTTGAGTCCCTTCTTCCATCCGTAGAAG 166662 Query 78799 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 78858 ||||| || | || || || || | || || || || || | |||||| | Sbjct 166663 TGCATTGAGGTGATACCGGCGTAGCTTGGTTTGGCCATGTGAATGTTGAGTGATTGAGAT 166722 Query 78859 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 78918 ||||||||||| ||||| | || |||||||| | || ||| ||| |||| || ||| Sbjct 166723 TGATCGATGAATGCTCCACGATCAGCAGCCATCTCGATAATCTCCTTCTGTGAGATCTCC 166782 Query 78919 CAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATGGAT 78975 || | || || | | ||| || || ||||| | || | || ||||||||| Sbjct 166783 CATACTGTGCGGTAGAGTTCCTTGATGTCATCTGGGATTCCTGGGATGTTTTGAATGGAT 166842 Query 78976 CCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAA 79035 ||| | || || | || ||||| ||||| || ||| ||| ||||||| ||| Sbjct 166843 CCATTGTTGGCAATGAGTCTGTTCTTCATCTCATCGGACCACAATCCTCTCTCGACCAAA 166902 Query 79036 ACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAA 79095 | | || | || ||||| || | || || || || || | || | || | ||| Sbjct 166903 TCCTTGAGCATGTGTGGATTCACAATCTGGAAGTCACCGGAGAGCACACGTCGGGAGTAG 166962 Query 79096 ATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCC 79155 ||||| || ||||| || | ||||| || ||||| | ||||||||| || || || Sbjct 166963 ATATTGGATGTGTATGGCTCAATAGATTCGTTGTTTCCAAGAATTTGAGCGGTGGAAGCA 167022 Query 79156 GTTGGCATAGGTGCCA 79171 |||||||| ||||||| Sbjct 167023 GTTGGCATCGGTGCCA 167038 >seq196 Length=138734 Score = 89.7 bits (98), Expect = 7e-13 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 49671 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 49730 |||||| || || |||||||| ||||| || | ||||| |||| ||| |||||||| Sbjct 135315 TTGGTACTCGGATACTCGTTTTTCAAAAAAGTTTGCCTTTCCCTCCATTGAAATATTTTC 135256 Query 49731 CATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAA 49790 ||| |||||||| || ||||| | | ||| | |||| |||||| | ||| | | Sbjct 135255 CATAAAATCAAAAGGGTTGGTCTCGTCATACAATTTTGAAAATCCAAGTTCTACGAGTAG 135196 Query 49791 TCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 49850 ||| || ||| | || ||| | ||||||| | | ||||| || |||| || Sbjct 135195 GTGATCAGCAACATAACGAATGTATTTCTTCATCAAATATCTGTTCATGCCAATAACGTT 135136 Query 49851 AACTGGAAGAGCCGCAGTAAGAAATTC 49877 || ||||||||| |||| | ||| || Sbjct 135135 GACAGGAAGAGCCTCAGTCAAAAAATC 135109 >seq154 Length=279404 Score = 89.7 bits (98), Expect = 7e-13 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 49671 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 49730 |||||| || || |||||||| ||||| || | ||||| |||| ||| |||||||| Sbjct 593 TTGGTACTCGGATACTCGTTTTTCAAAAAAGTTTGCCTTTCCCTCCATTGAAATATTTTC 652 Query 49731 CATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAA 49790 ||| |||||||| || ||||| | | ||| | |||| |||||| | ||| | | Sbjct 653 CATAAAATCAAAAGGGTTGGTCTCGTCATACAATTTTGAAAATCCAAGTTCTACGAGTAG 712 Query 49791 TCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 49850 ||| || ||| | || ||| | ||||||| | | ||||| || |||| || Sbjct 713 GTGATCAGCAACATAACGAATGTATTTCTTCATCAAATATCTGTTCATGCCAATAACGTT 772 Query 49851 AACTGGAAGAGCCGCAGTAAGAAATTC 49877 || ||||||||| |||| | ||| || Sbjct 773 GACAGGAAGAGCCTCAGTCAAAAAATC 799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718239126520200