Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq196 98.7 1e-15 >seq196 Length=138734 Score = 98.7 bits (108), Expect = 1e-15 Identities = 218/323 (67%), Gaps = 12/323 (4%) Strand=Plus/Minus Query 13596 ACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAAT 13655 |||| ||||||||| ||||| | || || |||| ||| |||||||||||||||||||| Sbjct 135302 ACTCGTTTTTCAAAAAAGTTTGCCTTTCCCTCCATTGAAATATTTTCCATAAAATCAAAA 135243 Query 13656 GGATT--TATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATCTATCAGCAA 13713 || || | | | ||| ||| ||| | | || ||||||| |||| |||||||| Sbjct 135242 GGGTTGGTCTCGTCAT--ACAATTTTGAAAATCCAAGTTCTACGAGTAGGTGATCAGCAA 135185 Query 13714 TAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTA 13773 | | ||| |||| ||| |||| | ||||| || || | || ||||||| Sbjct 135184 CATAACGAATGTATTTCTTCATCAAATATCTGTTCATGCCAATAACGTTGACAGGAAGAG 135125 Query 13774 TATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATTGTAATAATCT 13833 | || ||||| || || || || |||||||| | |||| ||| | | || Sbjct 135124 CCTCAGTCAAAAAATCCAACTCGATCGAAACAGCCTCATCGATAA----TGTCAAACACT 135069 Query 13834 CATTAGAAGGAGGATATTTTA--GATGTTTAAAAATTAAA--CACGCAAAATCACAATGA 13889 | || || | | | ||| || || |||| | | ||||||||||||| |||| Sbjct 135068 CGTTTCTGAGATGGTTTATTAACAATCTTGGAAAACAAGAGGCACGCAAAATCACGATGA 135009 Query 13890 AGGCCCTCATCTCTACTAATAAG 13912 || ||||||||||| | || ||| Sbjct 135008 AGACCCTCATCTCTGCAAAAAAG 134986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479708181237000