Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq196 93.3 4e-14 >seq196 Length=138734 Score = 93.3 bits (102), Expect = 4e-14 Identities = 219/324 (68%), Gaps = 14/324 (4%) Strand=Plus/Minus Query 13384 ACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCGAAT 13443 |||| ||||||||||||||| | || || |||| ||| ||||||||||||||||| || Sbjct 135302 ACTCGTTTTTCAAAAAAGTTTGCCTTTCCCTCCATTGAAATATTTTCCATAAAATCAAAA 135243 Query 13444 GGATT--TGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAATCTATCAGCAA 13501 || || | | | ||| ||| ||| | | || ||||||| | || |||||||| Sbjct 135242 GGGTTGGTCTCGTCAT--ACAATTTTGAAAATCCAAGTTCTACGAGTAGGTGATCAGCAA 135185 Query 13502 TAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTA 13561 | | ||| |||| ||| |||| | ||||| || || | || ||||||| Sbjct 135184 CATAACGAATGTATTTCTTCATCAAATATCTGTTCATGCCAATAACGTTGACAGGAAGAG 135125 Query 13562 TATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAAT---AATCTTAATAA 13618 | ||| ||||| || || || || |||||||| | ||||| || | | | Sbjct 135124 CCTCAGTCAAAAAATCCAACTCGATCGAAACAGCCTCATCGATAATGTCAAAC--ACTCG 135067 Query 13619 TGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAA--CACGCAAAATCACAATG 13676 | || | ||| | | |||| || || |||| | | ||||||||||||| ||| Sbjct 135066 TTTC-TGAGATG--GTTTATTAACAATCTTGGAAAACAAGAGGCACGCAAAATCACGATG 135010 Query 13677 AAGGCCCTCATCTCTACTAATAAG 13700 ||| ||||||||||| | || ||| Sbjct 135009 AAGACCCTCATCTCTGCAAAAAAG 134986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478569028300200