Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq19 114 1e-20 >seq19 Length=917137 Score = 114 bits (126), Expect = 1e-20 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 ||||||||||| ||| ||||||||| | ||||| || |||||||| ||| | || || Sbjct 766054 CACCAAATGGAGAGTCGACTCCTTTTGAATGTTGTAGTCAGACAATGTGCGTCCATCCTC 766113 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019 ||| || || ||||| || || | || ||| ||||| | || | || || || || Sbjct 766114 CAACTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGGATTCCCTCCTTGTCTTG 766173 Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTT 43079 ||| ||||||| | | | ||||||| ||| ||||| || | || ||||| || Sbjct 766174 AATCTTGGCTTTGACATTTTCGATTGTGTCGGAAGCTTCGACTTCAAGTGTGATAGTCTT 766233 Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 |||||| ||||| || ||||| || |||||| Sbjct 766234 TCCGGTGAGAGTCTTGACAAAGATCTGCATT 766264 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 ||||| || | ||| ||||||||| | |||||||||||||| || || | || || Sbjct 766283 ACCAAGTGAAGAGTCGACTCCTTTTGAATGTTGTAATCGGACAAGGTGCGGCCATCCTCG 766342 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 | ||||| ||||| || || | || || || || | || | ||||| || || | Sbjct 766343 AGCTGTTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGG 766402 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 ||| |||| || | | | ||||| ||||||||| || | || ||||| ||| Sbjct 766403 ATCTTGGCTTTAACATTCTCGATGGTGTCAGAAGCCTCGACTTCAAGTGTGATAGTCTTT 766462 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 ||||| ||||| || ||||| || |||||| Sbjct 766463 CCGGTGAGAGTCTTGACAAAGATCTGCATT 766492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381354238551690