Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq17 161 1e-34 seq196 86.0 8e-12 seq154 86.0 8e-12 >seq17 Length=1338299 Score = 161 bits (178), Expect = 1e-34 Identities = 478/734 (65%), Gaps = 10/734 (1%) Strand=Plus/Plus Query 71931 TGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGG 71990 |||||| | | || ||||| |||||||| || || | ||| || || || || Sbjct 168002 TGTATAGAGTTTCTCAAACTCCTCTCCCCAGCAATCATCGAGTCCTGGGCACTCGCATGG 168061 Query 71991 ACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCA 72050 |||||||| ||||| ||| ||| | | || |||||||| |||||||| |||| ||| Sbjct 168062 GCACATCAACGACCAATCTTGATCCTTCTCGACACGTTTCATGAAGAGATCTGGAACCCA 168121 Query 72051 AAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTT---CCTGTATTCTTTTTAAG 72107 || || | || | || | | | |||| || | | || || || || || Sbjct 168122 GAGGGCAAGGAACAAGTCACGAGCGC---GCTCTTCTTCTGGGCCAGTGTTTTTGCGGAG 168178 Query 72108 ATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGG 72167 | ||| |||| | | | || | ||||| || || | || || || | | || || Sbjct 168179 AGCGACGAACTCGAAGACGTCGGCGTGCCATGGCTCAAGATAGATAGCGAATGCACCTGG 168238 Query 72168 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 72227 || ||||||||||| ||||| | || | ||| ||||| || ||||| | | |||||| Sbjct 168239 ACGCTTGTTTCCTCCTTGATCGACATAACGAGCAGTGTTGTTGTAAACACGGAGCATTGG 168298 Query 72228 AATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATAT- 72286 ||||| |||||||| | |||||||| |||| ||| ||| |||||||||| | Sbjct 168299 AATAAGTCCATTGGAAGTTCCATTGGTTCCGGCGATGACTGATCCGGTGGCACGAATCTT 168358 Query 72287 -TGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC 72345 || |||| ||||| ||||| || || | || ||||| | ||| || |||| | Sbjct 168359 GTGGACATTG--AGACCAATTCCTCCAGCACTCTTCGAGATGAGTGCACACTGTTTCAGA 168416 Query 72346 GTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATT 72405 || || ||||| || || ||| || |||| | || | || || ||||| Sbjct 168417 GTGTCGTAGATTCCGAGAATCGAATCTTCGCTCATCGTGAGCAAGAAGCACGATGACATC 168476 Query 72406 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 72465 || |||||| ||||| | || || | || || || || || || | | ||| Sbjct 168477 TGTGGACGACACGTTCCAGAGTTGAAGAGAGTTGGTGATGCATGTGTCATGTACCGTTCC 168536 Query 72466 GACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCG 72525 |||| | |||||| || || || || | | || || | || ||||| | ||| Sbjct 168537 GACATCAAATTGTATGTTTCGATGGCGGCAGCAATGTCATTTCCGTGAATTCCGATAGCG 168596 Query 72526 ACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAG 72585 |||||||| ||||| |||||||| | ||||| | | || || || || | | |||| Sbjct 168597 ACACGCATCAACATTTGCTGAGGACGCTCAACAACTTCTTTGTTAATCTTGAGAAGGTAG 168656 Query 72586 GATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATA 72645 || || | || || || || || || |||| ||| |||| || ||||| | || Sbjct 168657 GACCGCTCGAGTGTCTTGAATCCGAAGTAAGTGTAGGAATAGTCACGATCGTACACGATT 168716 Query 72646 ACCGAATTGAGTTT 72659 | || ||||| || Sbjct 168717 GCGGAGTTGAGCTT 168730 Score = 131 bits (144), Expect = 2e-25 Identities = 295/443 (67%), Gaps = 3/443 (1%) Strand=Plus/Plus Query 70828 TTCGTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATA 70887 || ||||| | |||||||| || || || || || |||||||||| || ||||| Sbjct 166609 TTAGTACGCAAGTAGTACATTCCAGTCTTGAGTCCCTTCTTCCATCCGTAGAAGTGCATT 166668 Query 70888 CTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCG 70947 || | || ||||| || | ||| |||||||| || | || ||| ||||||| Sbjct 166669 GAGGTGATACCGGCGTAGCTTGGTTTGGCCATGTGAATGTTGAGTGATTGAGATTGATCG 166728 Query 70948 ATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATA 71007 ||||| ||||| | || |||||||| | || ||| ||| |||| || ||||| | Sbjct 166729 ATGAATGCTCCACGATCAGCAGCCATCTCGATAATCTCCTTCTGTGAGATCTCCCATACT 166788 Query 71008 GTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCA 71064 || || | | ||| || || ||||| | || | || |||||||||||| Sbjct 166789 GTGCGGTAGAGTTCCTTGATGTCATCTGGGATTCCTGGGATGTTTTGAATGGATCCATTG 166848 Query 71065 TCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTA 71124 | ||||| | || || || ||||| || ||| ||| ||||||| ||| | | Sbjct 166849 TTGGCAATGAGTCTGTTCTTCATCTCATCGGACCACAATCCTCTCTCGACCAAATCCTTG 166908 Query 71125 AGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTA 71184 || | || ||||| || | || || || || || | || | || | ||| ||||| Sbjct 166909 AGCATGTGTGGATTCACAATCTGGAAGTCACCGGAGAGCACACGTCGGGAGTAGATATTG 166968 Query 71185 CTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGC 71244 || || || || | || || || ||||| | ||||||||| || || ||||| ||| Sbjct 166969 GATGTGTATGGCTCAATAGATTCGTTGTTTCCAAGAATTTGAGCGGTGGAAGCAGTTGGC 167028 Query 71245 ATAGGTGCCACCAATAGACTATT 71267 || ||||||| | ||||| || Sbjct 167029 ATCGGTGCCATTAGAAGACTGTT 167051 >seq196 Length=138734 Score = 86.0 bits (94), Expect = 8e-12 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 41776 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTC 41835 |||||| || || |||||||| ||||| || | |||||| |||| ||| |||||||| Sbjct 135315 TTGGTACTCGGATACTCGTTTTTCAAAAAAGTTTGCCTTTCCCTCCATTGAAATATTTTC 135256 Query 41836 CATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAA 41895 ||| |||||||| || ||||| | | ||| | |||| |||||| | ||| | | Sbjct 135255 CATAAAATCAAAAGGGTTGGTCTCGTCATACAATTTTGAAAATCCAAGTTCTACGAGTAG 135196 Query 41896 TCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 41955 ||| || | | || ||| | ||||||| | | ||||| || |||| || Sbjct 135195 GTGATCAGCAACATAACGAATGTATTTCTTCATCAAATATCTGTTCATGCCAATAACGTT 135136 Query 41956 AACTGGAAGAGCCACAGTAAGAAATTC 41982 || ||||||||| |||| | ||| || Sbjct 135135 GACAGGAAGAGCCTCAGTCAAAAAATC 135109 Score = 84.2 bits (92), Expect = 3e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 42119 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAA 42178 |||||||||||||| || || |||||||| |||||||| || || ||||| ||||| | Sbjct 134927 GTGAGTCCGGGCATGAGACCGCGCTTTTTCAGCCAAAAAATCGAGGCAAACGATCCGCTA 134868 Query 42179 AAGAAGATTCCTTCTACTGCCGCAAAGGC 42207 || ||||| ||||| || || ||||| || Sbjct 134867 AAAAAGATCCCTTCGACAGCAGCAAATGC 134839 >seq154 Length=279404 Score = 86.0 bits (94), Expect = 8e-12 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 41776 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTC 41835 |||||| || || |||||||| ||||| || | |||||| |||| ||| |||||||| Sbjct 593 TTGGTACTCGGATACTCGTTTTTCAAAAAAGTTTGCCTTTCCCTCCATTGAAATATTTTC 652 Query 41836 CATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAA 41895 ||| |||||||| || ||||| | | ||| | |||| |||||| | ||| | | Sbjct 653 CATAAAATCAAAAGGGTTGGTCTCGTCATACAATTTTGAAAATCCAAGTTCTACGAGTAG 712 Query 41896 TCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 41955 ||| || | | || ||| | ||||||| | | ||||| || |||| || Sbjct 713 GTGATCAGCAACATAACGAATGTATTTCTTCATCAAATATCTGTTCATGCCAATAACGTT 772 Query 41956 AACTGGAAGAGCCACAGTAAGAAATTC 41982 || ||||||||| |||| | ||| || Sbjct 773 GACAGGAAGAGCCTCAGTCAAAAAATC 799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671111473561800