Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq7 118 2e-21 seq17 93.3 6e-14 >seq7 Length=1891389 Score = 118 bits (130), Expect = 2e-21 Identities = 215/314 (68%), Gaps = 2/314 (1%) Strand=Plus/Minus Query 125234 CTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGAT 125293 ||| ||||||||||||||| || ||||| | |||||||| ||||| || | || || Sbjct 174830 CTTCTACGGATTCCAAATCGCCATCGAGAATATCCACTCGGAGATGTATTCGAAGCTCAT 174771 Query 125294 TGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTTAACGCAATCGACACGGT 125353 ||| | |||||||| || |||| | ||| | | | |||||||| ||| | | | Sbjct 174770 TGAGACCTACATTCGTGACGAGCAAGAGAGACATAAGTTGTTTAACGCCATCTTCGAGTT 174711 Query 125354 GCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTC 125413 | || || ||||| | |||| | |||||| || | ||| | || Sbjct 174710 TGAATTCATCAAGAAGAAGGCCGACTGGGCTCTCAAGTGGATTTCGGATCAGAAGGCCTC 174651 Query 125414 GTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTT 125473 || |||||| | || | || ||||||||||| || ||||||||||| || || Sbjct 174650 GTTCGCCGAGCGTCTCATCGCTTTCGCCGCCGTCGAAGGCATCTTCTTCAGTGGATCGTT 174591 Query 125474 TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGA 125533 || | ||||| ||||| |||||||||||||| ||||| ||| |||| ||| ||||| Sbjct 174590 CGCCTCGATCTTCTGGCTTAAGAAGCGCGGACTTATGCCAGGATTGACTCACTCAAACGA 174531 Query 125534 GTTTATATCTCGAG 125547 | | |||||||| Sbjct 174530 GCT--GATCTCGAG 174519 Score = 91.5 bits (100), Expect = 2e-13 Identities = 158/228 (69%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 125645 CGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGG 125704 ||| ||||| | || || || ||||| || ||||| | || || ||| |||||| || Sbjct 174142 CGACGCCGTCAAAATCGAGCAGGAGTTCCTCACCGAGGCACTTCCAGTCGACATGATCGG 174083 Query 125705 CATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGA 125764 |||||||| || |||| ||||||| ||||| || || |||| | || ||| Sbjct 174082 AATGAACTGTCGTCTCATGTCGCAGTACATTGAGTTCGTCGCGGATCACTTGCTCGCCGA 174023 Query 125765 GTT--GATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATA 125822 | | ||| || |||| | | ||| | ||||| || || || |||||| | ||| Sbjct 174022 GCTCGGAT--GCGACAAGTTGTTCAAGGTGAAGAACCCATTCGACTTCATGGAGAACATC 173965 Query 125823 TCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 || | || || ||||||||||| ||||||||| ||| ||||||| Sbjct 173964 TCCATCGATGGAAAGACCAACTTCTTCGAGAAGCGCGTCTCCGAGTAC 173917 >seq17 Length=1338299 Score = 93.3 bits (102), Expect = 6e-14 Identities = 169/245 (69%), Gaps = 2/245 (1%) Strand=Plus/Minus Query 97985 CAACAATGGGTCCATTCAAAACATTACCATCATCCCGGAAGAGTTGCGCAGAA-TCTACA 98043 ||||||||| |||||||||||||| | ||||| || || | | ||| ||||| Sbjct 166851 CAACAATGGATCCATTCAAAACATCCCAGGAATCCCAGATGACAT-CAAGGAACTCTACC 166793 Query 98044 AGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGAGGTGTCT 98103 || || |||||||| | ||| | | ||||| |||||||| || | || | | Sbjct 166792 GCACAGTATGGGAGATCTCACAGAAGGAGATTATCGAGATGGCTGCTGATCGTGGAGCAT 166733 Query 98104 ACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCGTATGA 98163 ||| || || |||||| |||| | || | ||| | || | |||| |||| | Sbjct 166732 TCATCGATCAATCTCAATCACTCAACATTCACATGGCCAAACCAAGCTACGCCGGTATCA 166673 Query 98164 CTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATCTGAGAA 98223 | || || ||||| |||| |||||| ||||| |||||||| || |||||||| || | | Sbjct 166672 CCTCAATGCACTTCTACGGATGGAAGAAGGGACTCAAGACTGGAATGTACTACTTGCGTA 166613 Query 98224 CAAAG 98228 | ||| Sbjct 166612 CTAAG 166608 Score = 93.3 bits (102), Expect = 6e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 97209 GAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGC 97268 || |||||| ||| ||||| |||||||||| | | |||||||| ||| |||| Sbjct 167693 GAAACTGGACTTCCATACATCACCTACAAGGATGCTGCCAATCGCAAGTCCAATCAACAA 167634 Query 97269 CACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCG 97328 || | || |||||||| |||||||||||||||||||||| | |||||| | |||| Sbjct 167633 AACCTCGGAACCATCAAATGCTCCAATCTGTGCACGGAAATCATCGAGTACTCTGCTCCA 167574 Query 97329 GACGAGACGGCAGTTTGCGTTCTGGCATC 97357 || |||| || || ||| ||| || || Sbjct 167573 GATGAGATCGCTGTCTGCAATCTTGCTTC 167545 Score = 93.3 bits (102), Expect = 6e-14 Identities = 202/300 (67%), Gaps = 2/300 (1%) Strand=Plus/Minus Query 96820 CCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCACGATACGTTACACAG 96878 ||| ||| || | ||||||||| | | ||||| || || | || || || || Sbjct 168312 CCAATGGACTTATTCCAATGCTCCGTGTTTACAACAACACTG-CTCGTTATGTCGATCAA 168254 Query 96879 GGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTT 96938 || || || || || ||||| || | || |||| | || || |||||||| ||||| Sbjct 168253 GGAGGAAACAAGCGTCCAGGTGCATTCGCTATCTATCTTGAGCCATGGCACGCCGACGTC 168194 Query 96939 TTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTG 96998 || || || ||| | ||||||||| ||||| ||||| | || || | |||||| Sbjct 168193 TTCGAGTTCGTCGCTCTCCGCAAAAACACTGGCCCAGAAGAAGAGCGCGCTCGTGACTTG 168134 Query 96999 TTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTACTGG 97058 || ||| |||||||| |||||| | |||||||| || ||| | | | | | ||| Sbjct 168133 TTCCTTGCCCTCTGGGTTCCAGATCTCTTCATGAAACGTGTCGAGAAGGATCAAGATTGG 168074 Query 97059 AGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAG 97118 | |||||||| | || || || || ||||||||||| || ||||||||| Sbjct 168073 TCGTTGATGTGCCCATGCGAGTGCCCAGGACTCGATGATTGCTGGGGAGAGGAGTTTGAG 168014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741028584991800