Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq157 100 2e-16 seq19 100 2e-16 seq156 98.7 7e-16 >seq157 Length=243809 Score = 100 bits (110), Expect = 2e-16 Identities = 156/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || || || || || || ||||| |||||||| ||| ||| | | | || || Sbjct 218196 AACCAAGTGGAGAGTCGACTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGTCCATCCTC 218137 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||| || || ||| | |||| | ||| || || |||||||||||| ||||| Sbjct 218136 GAGTTGCTTTCCGGCGAAGATCAGTCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCTTG 218077 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || || ||| ||| | || ||||||||| || || || | |||||| || || Sbjct 218076 GATCTTAGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGTAATAGTCTT 218017 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAATAAA 15376 ||| |||||||| || || || |||||||| |||||||||| Sbjct 218016 ACCCGTCAGAGTCTTGACGAAGATTTGCATGACTGAAAATAAA 217974 >seq19 Length=917137 Score = 100 bits (110), Expect = 2e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 |||||||||||| || ||||| |||||||||||| ||| | | | || || ||||| Sbjct 764584 ATGAAGGGTGGATTCCTTTTGGATGTTGTAATCGGAGAGAGTGCGGCCATCCTCCAATTG 764643 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || || ||| | || | | ||| ||||| ||| |||||||| ||||| || || Sbjct 764644 CTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATCTT 764703 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| || |||| ||||| ||| ||| || || ||||| ||||| || || || Sbjct 764704 AGCCTTGACGTTTTCAATGGTGTCGGAGGCTTCGACTTCCAAGGTGATGGTCTTTCCGGT 764763 Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364 || ||| || || || || |||||| Sbjct 764764 CAAAGTCTTGACGAAGATCTGCATA 764788 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | |||||| || || || || || |||||||| || ||| | | | || || Sbjct 766510 AACGAGATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGAGTCCGTCCATCCTC 766569 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | || || || ||| | || | |||||||||||| ||||||||| || || || Sbjct 766570 GAGCTGCTTTCCGGCGAAGATGAGACGTTGTTGGTCTGGTGGAATTCCCTCCTTATCCTG 766629 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||| ||| ||| | || ||||| ||| | || || || | ||| |||||||| Sbjct 766630 GATCTTGGCCTTGACATTCTCGATGGTGTCGGAAGCCTCCACCTCCAGGGTGATGGTTTT 766689 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || |||| ||||| || || |||||||| Sbjct 766690 TCCAGTCAACGTTTTGACGAAGATTTGCAT 766719 >seq156 Length=445966 Score = 98.7 bits (108), Expect = 7e-16 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || || || || || || ||||| |||||||| ||| ||| | | | || || Sbjct 424351 AACCAAGTGGAGAGTCGACTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGTCCATCCTC 424410 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||| || || ||| | |||| | ||| || || |||||||||||| ||||| Sbjct 424411 GAGTTGCTTTCCGGCGAAGATCAGTCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCTTG 424470 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || || ||| ||| | || ||||||||| || || || | |||||| || || Sbjct 424471 GATCTTAGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGTAATAGTCTT 424530 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAATAA 15375 ||| |||||||| || || || |||||||| ||||||||| Sbjct 424531 ACCCGTCAGAGTCTTGACGAAGATTTGCATGACTGAAAATAA 424572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362164611535005