Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_004831.2 Length=43769 Score E Sequences producing significant alignments: (Bits) Value seq1552 86.0 2e-12 seq608 86.0 2e-12 seq654 82.4 2e-11 >seq1552 Length=9583 Score = 86.0 bits (94), Expect = 2e-12 Identities = 51/52 (98%), Gaps = 1/52 (2%) Strand=Plus/Minus Query 39858 CGTTAGAACGCGGCTACAATTAATACATAACCTTATGTATCATACACATACG 39909 |||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 9299 CGTTAGAACGCGGCTACAATTAATACAT-ACCTTATGTATCATACACATACG 9249 >seq608 Length=60012 Score = 86.0 bits (94), Expect = 2e-12 Identities = 51/52 (98%), Gaps = 1/52 (2%) Strand=Plus/Plus Query 39858 CGTTAGAACGCGGCTACAATTAATACATAACCTTATGTATCATACACATACG 39909 |||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 41979 CGTTAGAACGCGGCTACAATTAATACAT-ACCTTATGTATCATACACATACG 42029 >seq654 Length=54183 Score = 82.4 bits (90), Expect = 2e-11 Identities = 50/52 (96%), Gaps = 1/52 (2%) Strand=Plus/Minus Query 39858 CGTTAGAACGCGGCTACAATTAATACATAACCTTATGTATCATACACATACG 39909 ||||||||||||||| |||||||||||| ||||||||||||||||||||||| Sbjct 53907 CGTTAGAACGCGGCTTCAATTAATACAT-ACCTTATGTATCATACACATACG 53857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139933707823710