Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq19 87.8 1e-12 >seq19 Length=917137 Score = 87.8 bits (96), Expect = 1e-12 Identities = 148/213 (69%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219 ||||||||| | || ||||| ||||| ||||||||||| || | | | | || || Sbjct 765545 CACCAAATGAAGAGTGGACTCCTTTTGGATATTGTAATCCGAAAGAGTTCTTCCATCCTC 765604 Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT---TTC 33276 ||||||||||||| || || | ||||||||| || | || || || || || || Sbjct 765605 CAATTGCTTTCCAGCGAAGATGAGACGTTGCTGATCTGGTGGAATTCCCTCCTTGTCTTG 765664 Query 33277 GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGT 33336 | | | ||| || || ||| ||| |||||| || || || |||| || || || Sbjct 765665 GATTTTAGCC---TTGACGTTTTCAATGGTGTCGGAGGCTTCGACTTCCAAGGTGATGGT 765721 Query 33337 TTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| || || || || ||||| || ||||| Sbjct 765722 CTTTCCAGTGAGGGTCTTGACGAAGATCTGCAT 765754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318764759737890