Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq196 93.3 4e-14 seq154 93.3 4e-14 >seq196 Length=138734 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 12862 TTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTC 12921 ||| || ||| |||| ||||||||||||||||| ||||| || | ||||||||||| Sbjct 135315 TTGGTACTCGGATACTCGTTTTTCAAAAAAGTTTGCCTTTCCCTCCATTGAAATATTTTC 135256 Query 12922 CATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAACAA 12981 ||||||||| ||||| || || ||| ||||| | | || | ||||| | | Sbjct 135255 CATAAAATCAAAAGGGTTGGTCTCGTCATACAATTTTGAAAATCCAAGTTCTACGAGTAG 135196 Query 12982 TCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTT 13041 ||||||||| | ||||| | ||||| |||| | |||||| || || | || Sbjct 135195 GTGATCAGCAACATAACGAATGTATTTCTTCATCAAATATCTGTTCATGCCAATAACGTT 135136 Query 13042 TACAGGCATAGCTTCTGTTAAAAA 13065 ||||| | ||| || || ||||| Sbjct 135135 GACAGGAAGAGCCTCAGTCAAAAA 135112 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 13421 ATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGG 13480 |||||||| || |||||| | |||| |||| ||||||||||| || | || |||||| Sbjct 134711 ATATAAGTCTCAATCAATTTGGCATACGTTTCAGAATGAATATTCTCAACTGCGATTTGG 134652 Query 13481 AAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTC 13533 ||||||||||| ||| |||||||| || | || |||| |||||| ||| Sbjct 134651 AAACCATAAAAGAATCGAGCCTCTGTTAGTTTGACCTCGGTAGAAAATCGTTC 134599 >seq154 Length=279404 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 12862 TTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTC 12921 ||| || ||| |||| ||||||||||||||||| ||||| || | ||||||||||| Sbjct 593 TTGGTACTCGGATACTCGTTTTTCAAAAAAGTTTGCCTTTCCCTCCATTGAAATATTTTC 652 Query 12922 CATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAACAA 12981 ||||||||| ||||| || || ||| ||||| | | || | ||||| | | Sbjct 653 CATAAAATCAAAAGGGTTGGTCTCGTCATACAATTTTGAAAATCCAAGTTCTACGAGTAG 712 Query 12982 TCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTT 13041 ||||||||| | ||||| | ||||| |||| | |||||| || || | || Sbjct 713 GTGATCAGCAACATAACGAATGTATTTCTTCATCAAATATCTGTTCATGCCAATAACGTT 772 Query 13042 TACAGGCATAGCTTCTGTTAAAAA 13065 ||||| | ||| || || ||||| Sbjct 773 GACAGGAAGAGCCTCAGTCAAAAA 796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430965040163610