Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq157 116 9e-21 seq156 116 9e-21 >seq157 Length=243809 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || || || || ||||| || ||||| | || || || ||||| ||||| Sbjct 218183 GTCGACTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGTCCATCCTCGAGTTGCTTTCCG 218124 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || || || ||||| || || |||||||| || || || ||||| || || Sbjct 218123 GCGAAGATCAGTCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGGATCTTAGCCTTG 218064 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||||||| | || || || || |||||||||||||| || || || Sbjct 218063 ACATTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGTAATAGTCTTACCCGTCAGAGTC 218004 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 218003 TTGACGAAGATTTGCAT 217987 >seq156 Length=445966 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || || || || ||||| || ||||| | || || || ||||| ||||| Sbjct 424364 GTCGACTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGTCCATCCTCGAGTTGCTTTCCG 424423 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || || || ||||| || || |||||||| || || || ||||| || || Sbjct 424424 GCGAAGATCAGTCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGGATCTTAGCCTTG 424483 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||||||| | || || || || |||||||||||||| || || || Sbjct 424484 ACATTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGTAATAGTCTTACCCGTCAGAGTC 424543 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 424544 TTGACGAAGATTTGCAT 424560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151349643674940