Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq11 118 9e-22 seq356 116 3e-21 >seq11 Length=2072269 Score = 118 bits (130), Expect = 9e-22 Identities = 133/178 (75%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 5584 CTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTTACCTCGAAATCGTTGTGGCCGAA 5643 |||||| |||| ||| || | || ||||| |||| ||||||||||| ||| | ||| Sbjct 978026 CTCGCAAATCATCTGGGCAACACGATCGCCTTTCTTCACCTCGAAATCAGTGTCGTTGAA 977967 Query 5644 GTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCGGCGTCTATCACGCCCGCGCCCAC 5703 |||||| || | || || | ||| ||||||||| ||| || ||||| || || || Sbjct 977966 GTTGAAGAGAAGAACCTTGACTTCGCCACGGTAGTCGCTGTCGATGACGCCGGCTCCGAC 977907 Query 5704 GTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGAGCCACGCGGCCGTAGCACCCA 5761 |||||||| |||||| | || || ||||| || ||||| || ||||||||| | ||| Sbjct 977906 ATCGATGAATTGCTTGGCAGCAAGACCGGATCGTGGAGCAACTCGGCCGTAGTATCCA 977849 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 5585 TCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTTACCTCGAAATCGTTGTGGCCGAAG 5644 |||||||||| || || || || ||||| |||| || |||||||| | | | |||| Sbjct 977551 TCGCAGATCAATTGTGCAATACGATCGCCTTTCTTCACTTCGAAATCAGTATCGTTGAAG 977492 Query 5645 TTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCGGCGTCTATCACGCCCGCGCCCACG 5704 ||||| || | || || | ||| ||||||||| ||| || ||||| || || || Sbjct 977491 TTGAAGAGGAGAACCTTGACTTCGCCACGGTAGTCGCTGTCAATGACGCCGGCTCCGACA 977432 Query 5705 TCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGAGCCACGCGGCCGTAGCACCCATCG 5764 ||||||||||| ||| | || || || || || |||||||| | |||||| | || | Sbjct 977431 TCGATGAAGTGTTTGGCAGCGAGTCCAGATCGAGGAGCCACTCTTCCGTAGTATCCGACA 977372 Query 5765 GGAAGCTGTATCTG 5778 ||||| | ||||| Sbjct 977371 GGAAGTTCGATCTG 977358 Score = 82.4 bits (90), Expect = 7e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 5618 TTTACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAG 5677 || |||||||||||| || |||||||||||| || | || || | || |||||| Sbjct 978533 TTCACCTCGAAATCGGCGTCGCCGAAGTTGAAGAGAAGAACTTTGACCTCTCCACGGTAG 978474 Query 5678 TCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGG 5737 || ||| || ||||| || || || ||||||||||| ||| | || ||||| || || Sbjct 978473 TCACTGTCAATGACGCCGGCTCCAACATCGATGAAGTGTTTGGCGGCGAGGCCTGATCGA 978414 Query 5738 GGAGCCACGCGGCCGTAG 5755 || || || | |||||| Sbjct 978413 GGTGCGACTCTTCCGTAG 978396 >seq356 Length=129202 Score = 116 bits (128), Expect = 3e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 5585 TCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTTACCTCGAAATCGTTGTGGCCGAAG 5644 |||||||||| || || || || ||||| |||| ||||||||||| ||| | |||| Sbjct 128048 TCGCAGATCAATTGTGCAATACGATCGCCTTTCTTCACCTCGAAATCAGTGTCGTTGAAG 128107 Query 5645 TTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCGGCGTCTATCACGCCCGCGCCCACG 5704 ||||| || | || || | ||||||||||||| ||| || ||||| || || || Sbjct 128108 TTGAAGAGGAGGACCTTGACTTCGCCGCGGTAGTCGCTGTCGATGACGCCGGCTCCGACA 128167 Query 5705 TCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGAGCCACGCGGCCGTAGCACCCATCG 5764 ||||||||||| || | || || || || || |||||||| | |||||| | || | Sbjct 128168 TCGATGAAGTGTTTAGCGGCAAGTCCAGATCGAGGAGCCACTCTTCCGTAGTATCCGACA 128227 Query 5765 GGAAGCTGTATCTG 5778 ||||| | ||||| Sbjct 128228 GGAAGTTCGATCTG 128241 Score = 96.9 bits (106), Expect = 3e-15 Identities = 128/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 5584 CTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTTACCTCGAAATCGTTGTGGCCGAA 5643 |||||| |||| ||| || || || ||||| |||| ||||||||||| ||| | ||| Sbjct 127573 CTCGCAAATCATCTGGGCAATACGATCGCCTTTCTTCACCTCGAAATCAGTGTCGTTGAA 127632 Query 5644 GTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCGGCGTCTATCACGCCCGCGCCCAC 5703 |||||| || | || || | || || || ||| || || ||||| || || || Sbjct 127633 GTTGAAGAGAAGAACCTTGACTTCTCCACGATAATCGCTATCGATGACGCCAGCTCCGAC 127692 Query 5704 GTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGAGCCACGCGGCCGTAGCACCCA 5761 ||||||||||| ||| | || || || || || ||||| || || |||||| | ||| Sbjct 127693 ATCGATGAAGTGTTTGGCAGCGAGTCCAGATCGTGGAGCAACTCGACCGTAGTATCCA 127750 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 5618 TTTACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAG 5677 ||||||||||||||| ||| || ||||||||| || | || || | || |||||| Sbjct 127069 TTTACCTCGAAATCGGTGTCGCTGAAGTTGAAGAGAAGAACCTTGACCTCTCCACGGTAG 127128 Query 5678 TCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGG 5737 || ||| || ||||| || || || ||||||||||| ||| | || ||||| || || Sbjct 127129 TCACTGTCAATGACGCCGGCTCCAACATCGATGAAGTGTTTGGCGGCGAGGCCTGATCGA 127188 Query 5738 GGAGCCACGCGGCCGTAG 5755 || || || | |||||| Sbjct 127189 GGTGCGACTCTTCCGTAG 127206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430037077543160