Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq441 87.8 1e-12 seq11 84.2 1e-11 >seq441 Length=99109 Score = 87.8 bits (96), Expect = 1e-12 Identities = 181/267 (68%), Gaps = 2/267 (1%) Strand=Plus/Plus Query 25576 CTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACACATGGTGTAG 25635 ||||| || || ||||||||||||||| | | ||| |||||||||||||| || | Sbjct 96400 CTCTGATAAAGTTGACACGAGAGCTCTCCATTCTCCACATAAAACTGACACATCGTATGA 96459 Query 25636 CACGGAGGAAGAGCTATAAGGCCCAAGTCTTTAGGGTTCCAGGCGCACACGATGATGCAC 25695 ||||| || | | || | ||||| || || ||||| ||| ||| |||||| | | Sbjct 96460 CACGGTGGCAACACCATCTGACCCAAATCCGACGGATTCCACGCGGACATGATGATTCGC 96519 Query 25696 CTGTCTTCTGGGTTGTCCCTGATAAGATCCGCGGTGTTTTGC-AGCTGATCCACCCCCAT 25754 | | || || | ||| |||| | || | || || |||||||| || ||| Sbjct 96520 CGGCTGTCGGGCTCCTCCTTGATTTG-TCGGATCACTTCGGCGAGCTGATCGACACCCTG 96578 Query 25755 CCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCC 25814 || | |||||||| ||| ||| | |||||||||| |||||||| || || Sbjct 96579 ACCGGTGTAGTCTGTGTGACAATCCACGTATTTCGCTCCGAAATGTCTCCACTGAAATCC 96638 Query 25815 GTACACCGGTCCTAGGTCTCCATCTTC 25841 ||| || || || ||||| || || || Sbjct 96639 GTAGACTGGCCCGAGGTCACCCTCCTC 96665 >seq11 Length=2072269 Score = 84.2 bits (92), Expect = 1e-11 Identities = 190/282 (67%), Gaps = 3/282 (1%) Strand=Plus/Minus Query 25561 CCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAAC 25620 |||| ||||| | | |||| || || ||||||||||||||| | | ||| |||||| Sbjct 204008 CCATATCCCCGCTTC-TCTGATAAAGTTGACACGAGAGCTCTCCATTCTCCACATAAAAC 203950 Query 25621 TGACACATGGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCTTTAGGGTTCCAGGCG 25680 |||||||| |||| ||||| || | | || | ||||| || || ||||| ||| Sbjct 203949 TGACACATCGTGTGACACGGTGGCAACACCATCTGACCCAAATCCGACGGATTCCACGCG 203890 Query 25681 CACACGATGATGCACCTGTCTTCTGGGTTGTCCCTGATAAGATCCGCGGTGTTTTGC-AG 25739 ||| |||||| | || | || || | ||| |||| | || | || || || Sbjct 203889 GACATGATGATTCGCCGGCTGTCGGGCTCCTCCTTGATTTG-TCGGATCACTTCGGCGAG 203831 Query 25740 CTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATA 25799 |||||| || ||| || | |||||| | ||| ||| | || ||||||| Sbjct 203830 CTGATCGACACCCTGACCGGTGTAGTCAGTGTGACAATCCACGTATTTCGCGCCGAAATG 203771 Query 25800 CCTCCACTGGAACCCGTACACCGGTCCTAGGTCTCCATCTTC 25841 |||||||| || ||||| || || || ||||| || || || Sbjct 203770 TCTCCACTGAAATCCGTAGACTGGCCCGAGGTCACCCTCCTC 203729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340123899363765