Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq19 95.1 1e-14 >seq19 Length=917137 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| ||||| || || |||||||||||||||||| |||| |||| || | ||||| Sbjct 766054 CACCAAATGGAGAGTCGACTCCTTTTGAATGTTGTAGTCAGACAATGTGCGTCCATCCTC 766113 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 || |||||| ||| || | || | | ||||||||| || | | |||||||| Sbjct 766114 CAACTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGGATTCCCTCCTTGTCTTG 766173 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC-TCGACTGTTATGGTTT 48695 ||| || |||| | | || || |||| || || || | || | ||| || || | Sbjct 766174 AATCTTGGCTTTGACATTTTCGATTGTGTCGGAAG-CTTCGACTTCAAGTGTGATAGTCT 766232 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | ||||||||||| || ||||| |||||||| Sbjct 766233 TTCCGGTGAGAGTCTTGACAAAGATCTGCAT 766263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421234232133305