Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_005856.1 Length=94800 Score E Sequences producing significant alignments: (Bits) Value seq22 84.2 1e-11 >seq22 Length=1044653 Score = 84.2 bits (92), Expect = 1e-11 Identities = 166/238 (70%), Gaps = 7/238 (3%) Strand=Plus/Plus Query 22814 TCAGGCGGGATTCATACAGCGGCCAGCCATCCGTCATCCATATCACCACGTCAAAGGGTG 22873 ||||||||||| | ||| | | ||||||||||||||| | || || ||| || | Sbjct 397523 TCAGGCGGGAT-CGTACCGTG-CCAGCCATCCGTCATTCGATGCAGCAGTTCACAGTAGG 397580 Query 22874 ACAGCAGGCTCATAAGACGCCCCAGCGTCGCCATCGTGCGTTCAC-CGAATACGTGCGCA 22932 ||| | ||||||| | || ||||| ||| ||||||||| |||| ||||||||| Sbjct 397581 ACAATTCGGTCATAAGCAG--CCGGCGTCATCATAATGCGTTCACTCGAA-ACGTGCGCA 397637 Query 22933 ACAACCGTCTTCCGGAGCCTGTCATACGCGTAAAACAGCCAGCGCTGGCGCGATTTAGCC 22992 ||| | |||||||| | || | || ||| ||| |||| |||||||||| | Sbjct 397638 GCAAGAG-ATTCCGGAGAAAGGCACATGCATAAGACAACCAGTCCTGGCGCGATGAGACT 397696 Query 22993 CCGACGTATCCCCACTGTTCGTCCATTTCCGCGCAGACGATGACGTCACTGCCCGGCT 23050 |||||| | ||||||| ||| ||||| ||| | || ||| || ||||||| Sbjct 397697 CCGACGACGGCGCACTGTTTGTCGATTTCAACGCTGGGGAGTACGACATACCCCGGCT 397754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 303222985780905