Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq19 147 2e-30 seq24 118 1e-21 seq157 109 5e-19 seq156 109 5e-19 >seq19 Length=917137 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC 94836 || ||||||||| | || | |||||||| | ||| || |||||||| | ||| ||||| Sbjct 766261 CATTCCTCCTCTGAGACGAAGGACCAAGTGAAGAGTCGACTCCTTTTGAATGTTGTAATC 766320 Query 94837 GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896 | || ||| | |||||| |||||||||||| | ||||| | ||||||||| ||||| Sbjct 766321 GGACAAGGTGCGGCCATCCTCGAGCTGTTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGG 766380 Query 94897 AGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTC 94956 || || ||||| ||||| | || || || || || ||| ||||||| || Sbjct 766381 TGGGATTCCTTCCTTGTCTTGGATCTTGGCTTTAACATTCTCGATGGTGTCAGAAGCCTC 766440 Query 94957 GACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| |||| ||||| || ||||| || ||||| || |||||||||||||| Sbjct 766441 GACTTCAAGTGTGATAGTCTTTCCGGTGAGAGTCTTGACAAAGATCTGCAT 766491 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||||||||| || | |||||||| | ||||| ||||| || | |||||| ||| | Sbjct 764789 CCTCCTCTCAAGCGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTATAGTCGGAC 764848 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | |||||| ||||| |||||| | ||||| || | || |||||||| || Sbjct 764849 AAGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGTGGG 764908 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | || || ||||||||| ||| ||||| | | ||||| Sbjct 764909 ATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAGGCTTCGACT 764968 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| ||||| || || || ||||| ||||||||||| Sbjct 764969 TCCAAGGTGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCAT 765015 Score = 131 bits (144), Expect = 2e-25 Identities = 170/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || ||||||||| | || | |||||| || | ||| || |||||||| | ||| | Sbjct 766029 TTTGCATTCCTCCTCTGAGACGGAGCACCAAATGGAGAGTCGACTCCTTTTGAATGTTGT 766088 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | || || ||| |||||||| ||| |||||| | ||||| | ||| ||||||| Sbjct 766089 AGTCAGACAATGTGCGTCCATCCTCCAACTGCTTTCCGGCGAAGATGAGTCTCTGCTGAT 766148 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 |||| || || || || ||||| | ||| || || ||||| ||| ||||| | Sbjct 766149 CTGGTGGGATTCCCTCCTTGTCTTGAATCTTGGCTTTGACATTTTCGATTGTGTCGGAAG 766208 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| |||| ||||| || ||||| || ||||| || |||||||||||||| Sbjct 766209 CTTCGACTTCAAGTGTGATAGTCTTTCCGGTGAGAGTCTTGACAAAGATCTGCAT 766263 Score = 122 bits (134), Expect = 8e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || ||||||||||| | ||| |||||| | |||| | |||||||| || |||||| Sbjct 764591 GTGGATTCCTTTTGGATGTTGTAATCGGAGAGAGTGCGGCCATCCTCCAATTGCTTTCCG 764650 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 | ||||| | ||||||||| ||||| || || ||||| ||||| | || || |||||| Sbjct 764651 GCGAAGATGAGTCTTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATCTTAGCCTTG 764710 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 ||| | | ||||| | | ||||| || | |||||||| ||||| || | ||| Sbjct 764711 ACGTTTTCAATGGTGTCGGAGGCTTCGACTTCCAAGGTGATGGTCTTTCCGGTCAAAGTC 764770 Query 94991 TTCACAAAGATCTGCAT 95007 || || ||||||||||| Sbjct 764771 TTGACGAAGATCTGCAT 764787 Score = 118 bits (130), Expect = 1e-21 Identities = 154/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 |||||||| | |||||||||||||| | |||||| ||| | || || || ||||| Sbjct 765318 ACCAAGTGAAGGGTAGATTCCTTTTGAATGTTATAGTCG--GAGAGGGTGCGACCATCCT 765375 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 ||| || ||||| | ||||| ||||||||||| ||||| || || ||||| || || | Sbjct 765376 CCAATTGCTTTCCAGCGAAGATCAATCTTTGCTGGTCTGGTGGGATTCCTTCCTTATCCT 765435 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 || || ||||| ||| | | || |||| | ||||| || | ||||| || | Sbjct 765436 GGATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGCTTCGACCTCGAGAGTGATAGTCT 765495 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||||| ||||| || || || |||||||| Sbjct 765496 TTCCAGTGAGAGTCTTGACGAAAATCTGCAT 765526 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || || ||||| || | |||||| ||| || ||| | |||||| ||||| |||||| Sbjct 763854 GTCGACTCCTTCTGGATGTTATAGTCGGACAAGGTGCGGCCATCCTCGAGCTGCTTTCCG 763913 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 | ||||| || | || |||||||| || || || || ||||| | || || |||||| Sbjct 763914 GCGAAGATCAAACGCTGTTGATCTGGTGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTG 763973 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 ||| ||| ||||| | | ||||| || | |||||||| ||||| || || || Sbjct 763974 ACGTTCTCGATGGTGTCGGAGGCTTCGACTTCCAAGGTGATGGTCTTTCCGGTGAGGGTC 764033 Query 94991 TTCACAAAGATCTGCAT 95007 ||||| ||||||||||| Sbjct 764034 TTCACGAAGATCTGCAT 764050 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 |||||| || | ||| || |||||||| | || ||||| | ||| | |||||| Sbjct 765545 CACCAAATGAAGAGTGGACTCCTTTTGGATATTGTAATCCGAAAGAGTTCTTCCATCCTC 765604 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || || ||||| | ||||| | | |||||||||||| ||||| || || ||||| | Sbjct 765605 CAATTGCTTTCCAGCGAAGATGAGACGTTGCTGATCTGGTGGAATTCCCTCCTTGTCTTG 765664 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||||| ||||||||| | | ||||| | | ||||| || | |||||||| || Sbjct 765665 GATTTTAGCCTTGACGTTTTCAATGGTGTCGGAGGCTTCGACTTCCAAGGTGATGGTCTT 765724 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||| || || || || ||||||||||| Sbjct 765725 TCCAGTGAGGGTCTTGACGAAGATCTGCAT 765754 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 94865 TTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924 || ||| ||||||| | ||||||||||||||| ||||| ||||| ||||| | || || Sbjct 764189 TTACCGGCAAAGATAAGTCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGGATCTTA 764248 Query 94925 GCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTA 94984 |||||||| ||| ||||| | | || || || | |||||||| ||||| || Sbjct 764249 GCCTTGACATTCTCGATGGTGTCTGAGGCCTCAACCTCCAAAGTGATGGTCTTTCCGGTG 764308 Query 94985 AGAGTTTTCACAAAGATCTGCAT 95007 || || || || ||||| ||||| Sbjct 764309 AGGGTCTTAACGAAGATTTGCAT 764331 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | ||| || ||||| || | ||| || || | ||| | ||||||| Sbjct 764351 ACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTTCTTCCATCCTCC 764410 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | || ||||| | ||||| | | |||||||||||| || || || || ||||| | | Sbjct 764411 AATTGCTTTCCAGCGAAGATGAGACGTTGCTGATCTGGTGGGATTCCCTCCTTGTCTTGA 764470 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || ||||| ||| | | ||||| | || || || | |||||||| ||| Sbjct 764471 ATCTTGGCCTTCACGTTTTCAATGGTGTCGGAAGCCTCAACTTCGAGGGTGATGGTCTTT 764530 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| | || || || ||||||||||| Sbjct 764531 CCAGTCAAGGTCTTGACGAAGATCTGCAT 764559 Score = 89.7 bits (98), Expect = 5e-13 Identities = 139/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 94810 AGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCC 94869 |||||| ||||| || | ||| || || || ||| |||||| ||||| ||||| Sbjct 766522 AGTAGACTCCTTCTGGATGTTGTAGTCAGACAGAGTCCGTCCATCCTCGAGCTGCTTTCC 766581 Query 94870 GCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTT 94929 | | ||||| | | ||| || ||||| ||||| || || || || | || || ||||| Sbjct 766582 GGCGAAGATGAGACGTTGTTGGTCTGGTGGAATTCCCTCCTTATCCTGGATCTTGGCCTT 766641 Query 94930 GACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGT 94989 ||| ||| ||||| | || || || | ||||||||||||||||| | || Sbjct 766642 GACATTCTCGATGGTGTCGGAAGCCTCCACCTCCAGGGTGATGGTTTTTCCAGTCAACGT 766701 Query 94990 TTTCACAAAGATCTGCATG 95008 ||| || ||||| |||||| Sbjct 766702 TTTGACGAAGATTTGCATG 766720 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 94865 TTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924 || ||| ||||||| | | ||| |||||||| || || ||||| ||||| | ||| || Sbjct 765156 TTACCGGCAAAGATAAGACGTTGTTGATCTGGTGGGATTCCTTCCTTGTCTTGAATCTTG 765215 Query 94925 GCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTA 94984 |||||||| | | ||||| | | ||||| || | |||||||| ||||| || Sbjct 765216 GCCTTGACATTCTCAATGGTGTCGGAGGCCTCGACTTCCAAGGTGATGGTCTTTCCGGTC 765275 Query 94985 AGAGTTTTCACAAAGATCTGCAT 95007 | ||| || || ||||||||||| Sbjct 765276 AAAGTCTTGACGAAGATCTGCAT 765298 >seq24 Length=791117 Score = 118 bits (130), Expect = 1e-21 Identities = 154/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 |||||||| | ||||||||||||||| | |||||| ||| | || || || ||||| Sbjct 463828 ACCAAGTGAAGAGTAGATTCCTTTTGAATGTTATAGTCG--GAGAGGGTGCGACCATCCT 463885 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 ||| || |||||| | ||||| | ||||||||| ||||| || || ||||| || || | Sbjct 463886 CCAATTGCTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGGATTCCTTCCTTATCCT 463945 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 || || ||||| ||| | | || |||| | |||| || | ||||| || | Sbjct 463946 GGATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGCTCCGACTTCGAGAGTGATAGTCT 464005 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||||| ||||| || || || |||||||| Sbjct 464006 TTCCAGTGAGAGTCTTGACGAAAATCTGCAT 464036 Score = 114 bits (126), Expect = 1e-20 Identities = 153/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 |||||||| | |||||||||||||| | |||||| ||| | || || || ||||| Sbjct 463199 ACCAAGTGAAGGGTAGATTCCTTTTGAATGTTATAGTCG--GAGAGGGTGCGACCATCCT 463256 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 ||| || |||||| | ||||| | ||||||||| ||||| || || ||||| || || | Sbjct 463257 CCAATTGCTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGGATTCCTTCCTTATCCT 463316 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 || || ||||| ||| | | || |||| | |||| || | ||||| || | Sbjct 463317 GGATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGCTCCGACTTCGAGAGTGATAGTCT 463376 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||||| ||||| || || || |||||||| Sbjct 463377 TTCCAGTGAGAGTCTTGACGAAAATCTGCAT 463407 >seq157 Length=243809 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | ||| || |||||||| | ||| || ||| | ||| |||||| Sbjct 218195 ACCAAGTGGAGAGTCGACTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGTCCATCCTCG 218136 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || || |||||| | ||||| | ||||||||||||||| ||||| ||||| ||||| | Sbjct 218135 AGTTGCTTTCCGGCGAAGATCAGTCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGG 218076 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || |||||||| ||| || || | | ||||| || | || || || || Sbjct 218075 ATCTTAGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGTAATAGTCTTA 218016 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || ||||| || || ||||| |||||| Sbjct 218015 CCCGTCAGAGTCTTGACGAAGATTTGCATG 217986 >seq156 Length=445966 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | ||| || |||||||| | ||| || ||| | ||| |||||| Sbjct 424352 ACCAAGTGGAGAGTCGACTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGTCCATCCTCG 424411 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || || |||||| | ||||| | ||||||||||||||| ||||| ||||| ||||| | Sbjct 424412 AGTTGCTTTCCGGCGAAGATCAGTCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGG 424471 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || |||||||| ||| || || | | ||||| || | || || || || Sbjct 424472 ATCTTAGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGTAATAGTCTTA 424531 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || ||||| || || ||||| |||||| Sbjct 424532 CCCGTCAGAGTCTTGACGAAGATTTGCATG 424561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448272679969800