Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq17 178 2e-39 seq196 86.0 8e-12 seq7 82.4 1e-10 >seq17 Length=1338299 Score = 178 bits (196), Expect = 2e-39 Identities = 483/736 (66%), Gaps = 14/736 (2%) Strand=Plus/Plus Query 63125 TGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGG 63184 |||||| | | || ||||| |||||||| || || | ||| || || || || Sbjct 168002 TGTATAGAGTTTCTCAAACTCCTCTCCCCAGCAATCATCGAGTCCTGGGCACTCGCATGG 168061 Query 63185 ACACATCAACGACCACTCTCCGTCATCCTTC---ACTCGTTTCATAAAGAGATCAGGAAT 63241 |||||||||||||| ||| | ||||||| || |||||||| |||||||| |||| Sbjct 168062 GCACATCAACGACCAATCT---TGATCCTTCTCGACACGTTTCATGAAGAGATCTGGAAC 168118 Query 63242 CCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAG 63301 ||| || || | || | || | | | | ||| || || || || || || Sbjct 168119 CCAGAGGGCAAGGAACAAGTCACGAGCGCGCTCTTCTTCTGGGCCAGTGTTTTTGCGGAG 168178 Query 63302 ATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGG 63361 | ||| |||| | | | || | ||||| || || | || || || | | || || Sbjct 168179 AGCGACGAACTCGAAGACGTCGGCGTGCCATGGCTCAAGATAGATAGCGAATGCACCTGG 168238 Query 63362 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 63421 || ||||||||||| ||||| | || | ||| ||||| || ||||| | | |||||| Sbjct 168239 ACGCTTGTTTCCTCCTTGATCGACATAACGAGCAGTGTTGTTGTAAACACGGAGCATTGG 168298 Query 63422 AATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATT 63481 ||||| || || || | |||||||| |||| ||| ||| |||||||||| || Sbjct 168299 AATAAGTCCATTGGAAGTTCCATTGGTTCCGGCGATGACTGATCCGGTGGCACGAATCTT 168358 Query 63482 ----ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTA 63537 || |||| ||||| ||||| || || | || ||||| | ||| || |||| | Sbjct 168359 GTGGAC--ATTG--AGACCAATTCCTCCAGCACTCTTCGAGATGAGTGCACACTGTTTCA 168414 Query 63538 ACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACA 63597 ||||| ||||| || || ||| ||| |||| | || | || || |||| Sbjct 168415 GAGTGTCGTAGATTCCGAGAATCGAATCTTCGCTCATCGTGAGCAAGAAGCACGATGACA 168474 Query 63598 TTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTT 63657 | || |||||| ||||| | || || | || || || || || || | | || Sbjct 168475 TCTGTGGACGACACGTTCCAGAGTTGAAGAGAGTTGGTGATGCATGTGTCATGTACCGTT 168534 Query 63658 CAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTG 63717 | || | | |||||| || || || || | | || || | |||||||| | | Sbjct 168535 CCGACATCAAATTGTATGTTTCGATGGCGGCAGCAATGTCATTTCCGTGAATTCCGATAG 168594 Query 63718 CGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGT 63777 |||||||||| ||||| |||||||| | ||||| | | ||||| || || | | || Sbjct 168595 CGACACGCATCAACATTTGCTGAGGACGCTCAACAACTTCTTTGTTAATCTTGAGAAGGT 168654 Query 63778 AGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAA 63837 |||| || | || || || || || || |||| ||| |||| || ||||| | | Sbjct 168655 AGGACCGCTCGAGTGTCTTGAATCCGAAGTAAGTGTAGGAATAGTCACGATCGTACACGA 168714 Query 63838 TAACCGAGTTGAGTTT 63853 | | |||||||| || Sbjct 168715 TTGCGGAGTTGAGCTT 168730 Score = 127 bits (140), Expect = 3e-24 Identities = 290/436 (67%), Gaps = 3/436 (1%) Strand=Plus/Plus Query 62016 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 62075 || || || ||||| | ||||||||||| || || || || |||||||||| || Sbjct 166603 GCTGGCTTAGTACGCAAGTAGTACATTCCAGTCTTGAGTCCCTTCTTCCATCCGTAGAAG 166662 Query 62076 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 62135 ||||| || | || || || || | || || || || || | |||||| | Sbjct 166663 TGCATTGAGGTGATACCGGCGTAGCTTGGTTTGGCCATGTGAATGTTGAGTGATTGAGAT 166722 Query 62136 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 62195 ||||||||||| ||||| | || |||||||| | || ||| ||| |||| || ||| Sbjct 166723 TGATCGATGAATGCTCCACGATCAGCAGCCATCTCGATAATCTCCTTCTGTGAGATCTCC 166782 Query 62196 CAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATGGAT 62252 || | || || | | ||| || || ||||| | || | || ||||||||| Sbjct 166783 CATACTGTGCGGTAGAGTTCCTTGATGTCATCTGGGATTCCTGGGATGTTTTGAATGGAT 166842 Query 62253 CCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAA 62312 ||| | || || | || ||||| |||||||| ||| ||| ||||||| ||| Sbjct 166843 CCATTGTTGGCAATGAGTCTGTTCTTCATCTCATCGGACCACAATCCTCTCTCGACCAAA 166902 Query 62313 ACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAA 62372 | | || | || ||||| || | || || || || || | || | || | ||| Sbjct 166903 TCCTTGAGCATGTGTGGATTCACAATCTGGAAGTCACCGGAGAGCACACGTCGGGAGTAG 166962 Query 62373 ATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCA 62432 ||||| || || || || | || || || ||||| | ||||||||| || || ||| Sbjct 166963 ATATTGGATGTGTATGGCTCAATAGATTCGTTGTTTCCAAGAATTTGAGCGGTGGAAGCA 167022 Query 62433 GTCGGCATAGGTGCCA 62448 || ||||| ||||||| Sbjct 167023 GTTGGCATCGGTGCCA 167038 >seq196 Length=138734 Score = 86.0 bits (94), Expect = 8e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 33340 ATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG 33399 || ||||| || || |||||||||||||| || || |||||||| |||||||| || Sbjct 134945 ATAAGTTCATTAGAGTGAGTGAGTCCGGGCATGAGACCGCGCTTTTTCAGCCAAAAAATC 134886 Query 33400 GAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33446 || || || ||||| ||| ||||| ||||| || |||||||| || Sbjct 134885 GAGGCAAACGATCCGCTAAAAAAGATCCCTTCGACAGCAGCAAATGC 134839 >seq7 Length=1891389 Score = 82.4 bits (90), Expect = 1e-10 Identities = 124/176 (70%), Gaps = 3/176 (2%) Strand=Plus/Plus Query 33340 ATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG 33399 || || ||||| || || | ||| ||||| || || ||||| |||||||| || || Sbjct 174525 ATCAGCTCGTTTGAGTGAGTCAATCCTGGCATAAGTCCGCGCTTCTTAAGCCAGAAGATC 174584 Query 33400 GAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCT 33459 || ||||| |||||| |||||||| ||||| || || || || || || || | ||| Sbjct 174585 GAGGCGAACGATCCACTGAAGAAGATGCCTTCGACGGCGGCGAAAGCGATGAGACGCTCG 174644 Query 33460 CCATAACCGGCGCTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTT 33512 | | ||| | | || |||||||| ||||||| ||||||||||| || Sbjct 174645 GCGAACGAGGCCTTCTGATCCGAAATCCACTTGAGAGCCCAGTCGGCCTTCTTCTT 174700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622921464493800