Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq19 109 5e-19 seq24 104 2e-17 >seq19 Length=917137 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | ||||| || || | || ||||| | ||||| | ||| | || | Sbjct 766492 AATGCAGATCTTTGTCAAGACTCTCACCGGAAAGACTATCACACTTGAAGTCGAGGCTTC 766433 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||||||||| | || ||| ||||| ||||| ||||| || || || || || Sbjct 766432 TGACACCATCGAGAATGTTAAAGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGACCA 766373 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 ||||||||||| | || ||| ||||| ||||| |||| | | | | ||| || || Sbjct 766372 GCAAAGACTCATCTTCGCCGGAAAACAGCTCGAGGATGGCCGCACCTTGTCCGATTACAA 766313 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||||||||| || || ||| | || ||||||| | || |||||||||| Sbjct 766312 CATTCAAAAGGAGTCGACTCTTCACTTGGTCCTTCGTCTCAGAGGAGGAA 766263 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | ||||| || || | || ||||| | ||||| | ||| | ||| | Sbjct 766264 AATGCAGATCTTTGTCAAGACTCTCACCGGAAAGACTATCACACTTGAAGTCGAAGCTTC 766205 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||| ||||| | |||||| |||||| ||||| || || || || || ||||| Sbjct 766204 CGACACAATCGAAAATGTCAAAGCCAAGATTCAAGACAAGGAGGGAATCCCACCAGATCA 766145 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || |||||||| | || ||| || || | || |||| | | | ||||| || Sbjct 766144 GCAGAGACTCATCTTCGCCGGAAAGCAGTTGGAGGATGGACGCACATTGTCTGACTACAA 766085 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||||||||| || || ||| ||||| |||| || | || |||||||||| Sbjct 766084 CATTCAAAAGGAGTCGACTCTCCATTTGGTGCTCCGTCTCAGAGGAGGAA 766035 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || ||||| || ||||||||| | |||||| | || | || | | Sbjct 766719 ATGCAAATCTTCGTCAAAACGTTGACTGGAAAAACCATCACCCTGGAGGTGGAGGCTTCC 766660 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | ||||| ||||| || || || || || || || || ||| Sbjct 766659 GACACCATCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGAATTCCACCAGACCAA 766600 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGAT-GATAGAAAC-GTCAGCGACTATA 26946 ||| | ||||| | || ||| || || ||||| ||| || || | ||| ||||| | Sbjct 766599 CAACGTCTCATCTTCGCCGGAAAGCAGCTCGAGGATGGACGGACTCTGTC--TGACTACA 766542 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 |||| || || || |||||| | ||||| || || | || | ||||||| Sbjct 766541 ACATCCAGAAGGAGTCTACTCTTCATCTCGTTCTTCGTCTCCGCGGAGGAA 766491 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || || || ||||| | |||||| | ||| | ||| | | Sbjct 764787 ATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACCATCACCTTGGAAGTCGAAGCCTCC 764728 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | ||||| ||||| ||||| ||||| || || || || || Sbjct 764727 GACACCATTGAAAACGTCAAGGCTAAGATCCAAGACAAGGAAGGAATCCCACCAGACCAG 764668 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||||||||||| | || ||| || ||| | || |||| | | || ||| || ||| Sbjct 764667 CAAAGACTCATCTTCGCCGGAAAGCAATTGGAGGATGGCCGCACTCTCTCCGATTACAAC 764608 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || ||||| ||||| || | ||||| ||||| Sbjct 764607 ATCCAAAAGGAATCCACCCTTCATCTCGTCCT 764576 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | || ||||| | |||||| | ||| | ||| | | Sbjct 764050 ATGCAGATCTTCGTGAAGACCCTCACCGGAAAGACCATCACCTTGGAAGTCGAAGCCTCC 763991 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | ||||| ||||| ||||| || || || || || |||||| Sbjct 763990 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCACCAGATCAA 763931 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | | || | || ||| || || ||||| |||| | | | | |||||||||| Sbjct 763930 CAGCGTTTGATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACCTTGTCCGACTATAAC 763871 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGA 26996 || || || || || || ||||||| || || | ||| | |||||| Sbjct 763870 ATCCAGAAGGAGTCGACCCTCCATCTCGTTCTCCGTCTTCGTGGAGGA 763823 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | |||||||| | ||||| |||| | ||| | Sbjct 765526 ATGCAGATTTTCGTCAAGACTCTCACTGGAAAGACTATCACTCTCGAGGTCGAAGCCTCT 765467 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || ||||| ||| | || || ||||| || || ||||| || || || || || Sbjct 765466 GATACCATTGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGAATCCCACCAGACCAG 765407 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 |||||| | || | || || || ||| | || |||| | | | | || |||||||||| Sbjct 765406 CAAAGATTGATCTTCGCTGGAAAGCAATTGGAGGATGGTCGCACCCTCTCCGACTATAAC 765347 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||||||| |||||||| | || ||||||| | ||| | ||||| Sbjct 765346 ATTCAAAAGGAATCTACCCTTCACTTGGTCCTTCGTCTTCGTGGAGG 765300 >seq24 Length=791117 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | |||||||| | ||||| ||||| | | | | Sbjct 464036 ATGCAGATTTTCGTCAAGACTCTCACTGGAAAGACTATCACTCTCGAAGTCGGAGCCTCT 463977 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || ||||| ||| | || || ||||| || || ||||| || || || || || Sbjct 463976 GATACCATTGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGAATCCCACCAGACCAG 463917 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||||||||||| | || ||| || ||| | || |||| | | | | || |||||||||| Sbjct 463916 CAAAGACTCATCTTCGCCGGAAAGCAATTGGAGGATGGTCGCACCCTCTCCGACTATAAC 463857 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||||||| ||||||||| | || ||||||| | ||| | ||||| Sbjct 463856 ATTCAAAAGGAATCTACTCTTCACTTGGTCCTTCGTCTTCGTGGAGG 463810 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | |||||||| | ||||| ||||| | | | | Sbjct 463407 ATGCAGATTTTCGTCAAGACTCTCACTGGAAAGACTATCACTCTCGAAGTCGGAGCCTCT 463348 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || ||||| ||| | || || ||||| || || ||||| || || || || || Sbjct 463347 GATACCATTGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGAATCCCACCAGACCAG 463288 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||||||||||| | || ||| || ||| | || |||| | | | | || |||||||||| Sbjct 463287 CAAAGACTCATCTTCGCCGGAAAGCAATTGGAGGATGGTCGCACCCTCTCCGACTATAAC 463228 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||||||| |||||||| | || ||||||| Sbjct 463227 ATTCAAAAGGAATCTACCCTTCACTTGGTCCT 463196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478642625259600