Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq17 196 1e-44 seq178 122 2e-22 >seq17 Length=1338299 Score = 196 bits (216), Expect = 1e-44 Identities = 437/647 (68%), Gaps = 12/647 (2%) Strand=Plus/Minus Query 363391 TTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGT-ATCAATGGTGATATTGTTGA 363449 ||||||| ||||| | ||| |||||||| |||| || || || ||||||| Sbjct 168682 TTCGGATTCAAGACACTCGAGCGGTCCTACCT-TCTCAAGATTAACAAAGAAGTTGTTGA 168624 Query 363450 ACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGC 363509 || || ||||| ||||| |||||||| ||||| || || || | || ||| ||| Sbjct 168623 GCGTCCTCAGCAAATGTTGATGCGTGTCGCTATCGGAATTCACGGAAATGACATTGCTGC 168564 Query 363510 CGCGATTGAAACATATAAGCTTCTAAGT--GCTCGTGTAT-TCACGCACGCCACGCCAAC 363566 ||| || |||||||| || || | || | || ||| | || || || | ||||| Sbjct 168563 CGCCATCGAAACATACAA--TTTGATGTCGGAACG-GTACATGACACATGCATCACCAAC 168507 Query 363567 AATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAA 363626 | | ||| ||||||| || |||||||||||| || ||||| | || | |||| Sbjct 168506 TCTCTTCAACTCTGGAACGTGTCGTCCACAGATGTCATCGTGCTTCTTGCTCACGATGAG 168447 Query 363627 GGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAA 363686 || ||||| || || |||| ||||| || || | ||||| || || || |||| Sbjct 168446 CGAAGATTCGATTCTCGGAATCTACGACACTCTGAAACAGTGTGCACTCATCTCGAAGAG 168387 Query 363687 TGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC--ACAGAACAGTTACATTCGC 363744 ||| || ||||||||| | ||||||| ||||||| | || |||| ||| | Sbjct 168386 TGCTGGAGGAATTGGTCTCAATGTCCACAAGATTCGTGCCACCGGATCAGT--CATCGCC 168329 Query 363745 GGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCG 363804 || || ||| || ||||| || |||| ||||| ||||| | |||| ||||| Sbjct 168328 GGAACCAATGGAACTTCCAATGGACTTATTCCAATGCTCCGTGTTTACAACAACACTGCT 168269 Query 363805 AGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCT 363864 | || ||||| || || ||| ||||| ||| || || ||||| ||||| ||||| Sbjct 168268 CGTTATGTCGATCAAGGAGGAAACAAGCGTCCAGGTGCATTCGCTATCTATCTTGAGCCA 168209 Query 363865 CATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTG 363924 || ||||| | || ||||| | | ||||| |||||||| || ||| ||| | Sbjct 168208 TGGCACGCCGACGTCTTCGAGTTCGTCGCTCTCCGCAAAAACACTGGCCCAGAAGAAGAG 168149 Query 363925 CGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAG 363984 || || ||||| ||||| ||| || |||||| | || | || ||||| || || ||| Sbjct 168148 CGCGCTCGTGACTTGTTCCTTGCCCTCTGGGTTCCAGATCTCTTCATGAAACGTGTCGAG 168089 Query 363985 GCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCT 364031 | | | ||||||| | | |||||| ||| || ||||| || Sbjct 168088 AAGGATCAAGATTGGTCGTTGATGTGCCCATGCGAGTGCCCAGGACT 168042 Score = 84.2 bits (92), Expect = 6e-11 Identities = 265/408 (65%), Gaps = 2/408 (0%) Strand=Plus/Minus Query 364750 GCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCG 364809 || || ||||| || ||||| || || || || || ||||||||||| | | || || Sbjct 167036 GCACCGATGCCAACTGCTTCCACCGCTCAAATTCTTGGAAACAACGAATCTATTGAGCCA 166977 Query 364810 TTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAG 364869 | ||| |||| | || || || || || || ||||| || || | | | || ||| Sbjct 166976 TACACATCCAATATCTACTCCCGACGTGTGCTCTCCGGTGACTTCCAGATTGTGAATCCA 166917 Query 364870 TACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATC 364929 || | |||||||| | ||| | || ||||| || ||||||||| || Sbjct 166916 CACATGCTCAAGGATTTGGTCGAGAGAGGATTGTGGTCCGATGAGATGAAGAACAGACTC 166857 Query 364930 ATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATT 364989 || ||| ||||| || | || ||||| |||||| | ||||| || | ||| | Sbjct 166856 ATTGCCAACAATGGATCCATTCAAAACATCCCAGGAATCCCAGATGACATCAAGGAACTC 166797 Query 364990 TACAAAACCGTATGGGAAATTTC-CATGCGAACTCTCATTGATATGGCGGCCGATCGCGG 365048 ||| || |||||||| || || || | | | || || ||||| || ||||| || Sbjct 166796 TACCGCACAGTATGGGAGATCTCACAGAAGGA-GATTATCGAGATGGCTGCTGATCGTGG 166738 Query 365049 TGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAA 365108 || || ||| ||| || || | ||| | |||| | | |||| || |||| Sbjct 166737 AGCATTCATCGATCAATCTCAATCACTCAACATTCACATGGCCAAACCAAGCTACGCCGG 166678 Query 365109 GCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 | || || ||||| |||||||| ||||| || || ||||| || Sbjct 166677 TATCACCTCAATGCACTTCTACGGATGGAAGAAGGGACTCAAGACTGG 166630 >seq178 Length=305597 Score = 122 bits (134), Expect = 2e-22 Identities = 303/449 (67%), Gaps = 31/449 (7%) Strand=Plus/Minus Query 12825 TGATCCAAATGTCAGAGAATCCATGTCTTCAGTTGCTGTGGCATACGCTTTTCCTGTTTT 12884 |||||| || || |||| ||||| ||||||||||| || || | ||||||||| || Sbjct 266746 TGATCCGAACGTTAGAGCGTCCATATCTTCAGTTGCCGTTCCAAATACTTTTCCTGCCTT 266687 Query 12885 TAC-ATATGCAGCACATGTAGCTTCGGCCTCACATGGTGCTTGAACGACCGGAATGCCCA 12943 || | ||| ||||||| |||||| || |||||||| |||| |||||| || || |||| Sbjct 266686 CACAAGATG-AGCACATTGAGCTTCAGCTTCACATGGAGCTTCAACGACTGGGATTCCCA 266628 Query 12944 TTAGGGTTAGCATCTTTTTTACTTCTTCGCTATG----TTCGCGAGTTGCGCGAACGCTT 12999 | | || | | || ||||||||| | || || | | || | ||| | ||| Sbjct 266627 TCAACCCCAGTAAATGCTTCACTTCTTCGTTTTGCTGCTTTGTCACTTTCACGAGC-CTT 266569 Query 13000 CTCTTTTCTTGTTTTTCGACTTCAGTTGCATCGTCGGTTAATTTTAG-TTCGGATAGTGC 13058 ||| || |||||| |||| | ||||| | || ||||| ||||| | || Sbjct 266568 CTC---TCGAACTTTTCGGCTTCTTTCGCATC-ACCCTTCTCTTTAGCTTCGGTCAACGC 266513 Query 13059 TTGT---------GCCTGTCGTTCATTTCGTTTATCAAGCTCTTTCTTTTTCAAAACAGG 13109 || | || ||| |||| |||||| |||||||| |||||| | || Sbjct 266512 TTTTTCAGCTTCAGCACGTCTTTCAGATCGTTTTTCAAGCTCGCCACTTTTCATGTCTGG 266453 Query 13110 TGGCTTTCCGTCAAAAACATAGACGGGTTTAATTCCTGCTTCAATTAATCGAATGGTTCG 13169 |||||||| ||||| |||||||| || || ||||| ||||| | ||||| || || Sbjct 266452 AGGCTTTCCATCAAAGACATAGACCGGCTTGATTCCATTGTCAATCATACGAATAGTACG 266393 Query 13170 GTAAAAAATACCTGTTAAATG---TGAAGTCACTTCACCTTCGCAAGCTGCAAGTTGCCC 13226 || || ||||| | | ||| | ||| || || |||||| |||||| ||| Sbjct 266392 ATAGAACATACCCATAAGATGGCTAGTTGTCTCTCCATCTTCGC--TCTGCAA-TTG--- 266339 Query 13227 CGATGGACCTTGTCGAATAGCAAT-AAGA 13254 ||| | |||| |||| |||||| |||| Sbjct 266338 TGATCCATCTTGACGAACAGCAATCAAGA 266310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303298409084510