Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq157 113 4e-20 seq156 113 4e-20 seq19 113 4e-20 seq24 89.7 4e-13 >seq157 Length=243809 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | || || || | |||||| |||||||||||||| | Sbjct 217987 ATGCAAATCTTCGTCAAGACTCTGACGGGTAAGACTATTACCCTCGAAGTCGAGGCCTCC 218046 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||||||| | ||||| ||||| ||||| ||||| || || || ||||| Sbjct 218047 GATACCATCGAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATTCCACCAGATCAG 218106 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || |||||||| | || ||| ||||||||||| |||| | | || ||| || ||| Sbjct 218107 CAAAGACTGATCTTCGCCGGAAAGCAACTCGAGGATGGACGTACTCTCTCCGACTACAAC 218166 Query 24171 ATTCAAAAAGAATCTAC 24187 || ||||| || || || Sbjct 218167 ATCCAAAAGGAGTCGAC 218183 >seq156 Length=445966 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | || || || | |||||| |||||||||||||| | Sbjct 424560 ATGCAAATCTTCGTCAAGACTCTGACGGGTAAGACTATTACCCTCGAAGTCGAGGCCTCC 424501 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||||||| | ||||| ||||| ||||| ||||| || || || ||||| Sbjct 424500 GATACCATCGAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATTCCACCAGATCAG 424441 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || |||||||| | || ||| ||||||||||| |||| | | || ||| || ||| Sbjct 424440 CAAAGACTGATCTTCGCCGGAAAGCAACTCGAGGATGGACGTACTCTCTCCGACTACAAC 424381 Query 24171 ATTCAAAAAGAATCTAC 24187 || ||||| || || || Sbjct 424380 ATCCAAAAGGAGTCGAC 424364 >seq19 Length=917137 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || ||||| | || ||| | |||||||| ||| | Sbjct 765015 ATGCAGATCTTCGTGAAGACCCTCACCGGAAAGACCATCACCTTGGAAGTCGAAGCCTCC 764956 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | ||||| ||||| ||||| || || || || || |||||| Sbjct 764955 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCACCAGATCAA 764896 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | |||| | || ||| ||||| ||||| |||| | | | | | ||| |||||| Sbjct 764895 CAGCGTTTGATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACCTTGTCCGACTATAAC 764836 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || || || ||||| |||| || || | | ||||||||||| Sbjct 764835 ATCCAGAAGGAGTCTACCCTTCACTTGGTTCTCCGCTTGAGAGGAGG 764789 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||| || || | || ||||| | || || | ||||||||||| Sbjct 766492 AATGCAGATCTTTGTCAAGACTCTCACCGGAAAGACTATCACACTTGAAGTCGAGGCTTC 766433 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||||||| | || ||| ||||| ||||| ||||| || || || || || Sbjct 766432 TGACACCATCGAGAATGTTAAAGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGACCA 766373 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 || ||||| || | || ||| || || ||||| |||| | | | | | |||||| || Sbjct 766372 GCAAAGACTCATCTTCGCCGGAAAACAGCTCGAGGATGGCCGCACCTTGTCCGATTACAA 766313 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||||||||| || || || |||| || || | | | ||||||||| Sbjct 766312 CATTCAAAAGGAGTCGACTCTTCACTTGGTCCTTCGTCTCAGAGGAGGA 766264 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || ||||| | || ||| | |||||||| ||| | Sbjct 764050 ATGCAGATCTTCGTGAAGACCCTCACCGGAAAGACCATCACCTTGGAAGTCGAAGCCTCC 763991 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | ||||| ||||| ||||| || || || || || |||||| Sbjct 763990 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCACCAGATCAA 763931 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | |||| | || ||| ||||| ||||| |||| | | | | | ||| |||||| Sbjct 763930 CAGCGTTTGATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACCTTGTCCGACTATAAC 763871 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || || || || Sbjct 763870 ATCCAGAAGGAGTCGAC 763854 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||| || || | || ||||| | || || | |||||||| || Sbjct 766264 AATGCAGATCTTTGTCAAGACTCTCACCGGAAAGACTATCACACTTGAAGTCGAAGCTTC 766205 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||| ||||| | |||||| |||||| ||||| || || || || || ||||| Sbjct 766204 CGACACAATCGAAAATGTCAAAGCCAAGATTCAAGACAAGGAGGGAATCCCACCAGATCA 766145 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG-ACAGAAAC-GTCAGCGATTAT 24167 |||||||| || | || ||| ||||| | || |||| || | | ||| | | || Sbjct 766144 GCAGAGACTCATCTTCGCCGGAAAGCAGTTGGAGGATGGACGCACATTGTCTG--ACTAC 766087 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||||||||||| || || || | ||||| ||| | | | ||||||||| Sbjct 766086 AACATTCAAAAGGAGTCGACTCTCCATTTGGTGCTCCGTCTCAGAGGAGGA 766036 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| || ||||||||| | || ||| | || || ||||| | Sbjct 766719 ATGCAAATCTTCGTCAAAACGTTGACTGGAAAAACCATCACCCTGGAGGTGGAGGCTTCC 766660 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | ||||| ||||| || || || || || || || || ||| Sbjct 766659 GACACCATCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGAATTCCACCAGACCAA 766600 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGAAAC-GTCAGCGATTATA 24168 || | || || | || ||| ||||| ||||| ||| ||| || | ||| || || | Sbjct 766599 CAACGTCTCATCTTCGCCGGAAAGCAGCTCGAGGATGGACGGACTCTGTC--TGACTACA 766542 Query 24169 ACATTCAAAAAGAATCTACAATTCAT 24194 |||| || || || ||||| ||||| Sbjct 766541 ACATCCAGAAGGAGTCTACTCTTCAT 766516 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | |||||||| | || || |||| ||||| ||| Sbjct 765526 ATGCAGATTTTCGTCAAGACTCTCACTGGAAAGACTATCACTCTCGAGGTCGAAGCCTCT 765467 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| ||| | || || ||||| || || ||||| || || || || || Sbjct 765466 GATACCATTGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGAATCCCACCAGACCAG 765407 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || ||| |||| | || || |||||| | || |||| | | | || ||| |||||| Sbjct 765406 CAAAGATTGATCTTCGCTGGAAAGCAATTGGAGGATGGTCGCACCCTCTCCGACTATAAC 765347 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 |||||||| |||||||| |||| || || Sbjct 765346 ATTCAAAAGGAATCTACCCTTCACTTGGT 765318 >seq24 Length=791117 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | |||||||| | || || ||||||||| ||| Sbjct 463407 ATGCAGATTTTCGTCAAGACTCTCACTGGAAAGACTATCACTCTCGAAGTCGGAGCCTCT 463348 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| ||| | || || ||||| || || ||||| || || || || || Sbjct 463347 GATACCATTGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGAATCCCACCAGACCAG 463288 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || ||||| || | || ||| |||||| | || |||| | | | || ||| |||||| Sbjct 463287 CAAAGACTCATCTTCGCCGGAAAGCAATTGGAGGATGGTCGCACCCTCTCCGACTATAAC 463228 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 |||||||| |||||||| |||| || || Sbjct 463227 ATTCAAAAGGAATCTACCCTTCACTTGGT 463199 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | |||||||| | || || ||||||||| ||| Sbjct 464036 ATGCAGATTTTCGTCAAGACTCTCACTGGAAAGACTATCACTCTCGAAGTCGGAGCCTCT 463977 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| ||| | || || ||||| || || ||||| || || || || || Sbjct 463976 GATACCATTGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGAATCCCACCAGACCAG 463917 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || ||||| || | || ||| |||||| | || |||| | | | || ||| |||||| Sbjct 463916 CAAAGACTCATCTTCGCCGGAAAGCAATTGGAGGATGGTCGCACCCTCTCCGACTATAAC 463857 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 |||||||| |||||||| |||| || || Sbjct 463856 ATTCAAAAGGAATCTACTCTTCACTTGGT 463828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429918682312275