Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq19 131 2e-25 seq157 123 2e-23 seq156 123 2e-23 seq24 98.7 9e-16 >seq19 Length=917137 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || || | ||| | |||||||||||| || ||||| || ||| | Sbjct 763824 CCTCCACGAAGACGGAGAACGAGATGGAGGGTCGACTCCTTCTGGATGTTATAGTCGGAC 763883 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| |||||||| || ||| |||| |||||||| || || || ||| Sbjct 763884 AAGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGTGGG 763943 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| ||| || ||||| | ||| | || |||| || |||| Sbjct 763944 ATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAGGCTTCGACT 764003 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || ||||| || || || ||||| |||||||| Sbjct 764004 TCCAAGGTGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCAT 764050 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 131019 ACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGA 131078 ||| || || || || | ||||||||||||||||||||||||||| || |||||| Sbjct 766276 ACGAAGGACCAAGTGAAGAGTCGACTCCTTTTGAATGTTGTAATCGGACAAGGTGCGGCC 766335 Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTT 131138 ||||| ||||| || || ||| |||| | | |||||||| || ||||||||||| || Sbjct 766336 ATCCTCGAGCTGTTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGGATTCCTTCCTT 766395 Query 131139 GTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAA 131197 ||| ||| || |||| | | | ||| | || || | | ||||| || | || | Sbjct 766396 GTCTTGGATCTT-GGCTTTAACATTCTCGATGGTGTCAGAAGCCTCGACTTCAAGTGTGA 766454 Query 131198 CGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || ||||| ||||| || || || |||||||| Sbjct 766455 TAGTCTTTCCGGTGAGAGTCTTGACAAAGATCTGCAT 766491 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || || | ||| | ||| || |||||||| |||||||||||| Sbjct 764561 CCTCCACGGAGACGGAGGACGAGATGAAGGGTGGATTCCTTTTGGATGTTGTAATCGGAG 764620 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| | ||||| || ||| |||| | | |||||||| || ||| Sbjct 764621 AGAGTGCGGCCATCCTCCAATTGCTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGG 764680 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| ||||| ||| || ||||| | || | || |||| || |||| Sbjct 764681 ATTCCTTCCTTGTCTTGGATCTTAGCCTTGACGTTTTCAATGGTGTCGGAGGCTTCGACT 764740 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || ||||| | ||| || ||||| |||||||| Sbjct 764741 TCCAAGGTGATGGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 764787 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || || || || | ||| || |||||||||||||| || ||| Sbjct 765300 CCTCCACGAAGACGAAGGACCAAGTGAAGGGTAGATTCCTTTTGAATGTTATAGTCGGAG 765359 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| | ||||| || ||| |||| || | |||||||| || ||| Sbjct 765360 AGGGTGCGACCATCCTCCAATTGCTTTCCAGCGAAGATCAATCTTTGCTGGTCTGGTGGG 765419 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| || || ||| || ||| | | ||| | ||||| | || |||| Sbjct 765420 ATTCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGCTTCGACC 765479 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | || || || || ||||| || |||||||||||||| Sbjct 765480 TCGAGAGTGATAGTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCAT 765526 Score = 100 bits (110), Expect = 3e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 131019 ACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGA 131078 ||| ||||| ||||| | ||||||||||||||||||||||| || || ||||| Sbjct 766048 ACGGAGCACCAAATGGAGAGTCGACTCCTTTTGAATGTTGTAGTCAGACAATGTGCGTCC 766107 Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTT 131138 ||||| | |||||| || ||| |||| | | |||||| || || |||||||| || || Sbjct 766108 ATCCTCCAACTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGGATTCCCTCCTT 766167 Query 131139 GTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAA 131197 ||| ||| | | || |||| | || | || |||| | |||| || | || | Sbjct 766168 GTC-TTGAATCTTGGCTTTGACATTTTCGATTGTGTCGGAAGCTTCGACTTCAAGTGTGA 766226 Query 131198 CGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || ||||| ||||| || || || |||||||| Sbjct 766227 TAGTCTTTCCGGTGAGAGTCTTGACAAAGATCTGCAT 766263 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| ||||| ||||| | || ||||||||||| || |||||||| Sbjct 765528 CCTCCACGAAGACGGAGCACCAAATGAAGAGTGGACTCCTTTTGGATATTGTAATCCGAA 765587 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || | ||||| | ||||| || ||| |||| | ||| ||||| || || || Sbjct 765588 AGAGTTCTTCCATCCTCCAATTGCTTTCCAGCGAAGATGAGACGTTGCTGATCTGGTGGA 765647 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| |||||| ||||| | || | || |||| || |||| Sbjct 765648 ATTCCCTCCTTGTCTTGGATTTTAGCCTTGACGTTTTCAATGGTGTCGGAGGCTTCGACT 765707 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || || || || ||||| |||||||| Sbjct 765708 TCCAAGGTGATGGTCTTTCCAGTGAGGGTCTTGACGAAGATCTGCAT 765754 >seq157 Length=243809 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || || || || | |||||||||||||| |||||||| ||| Sbjct 218213 CCTCCACGGAGACGGAGAACCAAGTGGAGAGTCGACTCCTTTTGGATGTTGTAGTCGGAG 218154 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| || ||||| || ||| |||| | | ||||| || || || Sbjct 218153 AGAGTACGTCCATCCTCGAGTTGCTTTCCGGCGAAGATCAGTCTTTGCTGATCTGGTGGA 218094 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| ||||| ||| || ||||| | ||| | ||||||| || ||||| Sbjct 218093 ATTCCTTCCTTGTCTTGGATCTTAGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACT 218034 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 |||| ||||| || ||||| || ||||| || ||||| || ||||||||| Sbjct 218033 TCGAGGGTAATAGTCTTACCCGTCAGAGTCTTGACGAAGATTTGCATGACT 217983 >seq156 Length=445966 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || || || || | |||||||||||||| |||||||| ||| Sbjct 424334 CCTCCACGGAGACGGAGAACCAAGTGGAGAGTCGACTCCTTTTGGATGTTGTAGTCGGAG 424393 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| || ||||| || ||| |||| | | ||||| || || || Sbjct 424394 AGAGTACGTCCATCCTCGAGTTGCTTTCCGGCGAAGATCAGTCTTTGCTGATCTGGTGGA 424453 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| ||||| ||| || ||||| | ||| | ||||||| || ||||| Sbjct 424454 ATTCCTTCCTTGTCTTGGATCTTAGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACT 424513 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 |||| ||||| || ||||| || ||||| || ||||| || ||||||||| Sbjct 424514 TCGAGGGTAATAGTCTTACCCGTCAGAGTCTTGACGAAGATTTGCATGACT 424564 >seq24 Length=791117 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || || || || | ||| || |||||||||||||| || ||| Sbjct 463181 CCTCCACGGAGACGAAGGACCAAGTGAAGGGTAGATTCCTTTTGAATGTTATAGTCGGAG 463240 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| | ||||| || ||| |||| | | |||||||| || ||| Sbjct 463241 AGGGTGCGACCATCCTCCAATTGCTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGG 463300 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| || || ||| || ||| | | ||| | ||||| | || ||| Sbjct 463301 ATTCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGCTCCGACT 463360 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | || || || || ||||| || |||||||||||||| Sbjct 463361 TCGAGAGTGATAGTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCAT 463407 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || || || || | || || |||||||||||||| || ||| Sbjct 463810 CCTCCACGAAGACGAAGGACCAAGTGAAGAGTAGATTCCTTTTGAATGTTATAGTCGGAG 463869 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| | ||||| || ||| |||| | | |||||||| || ||| Sbjct 463870 AGGGTGCGACCATCCTCCAATTGCTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGG 463929 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| || || ||| || ||| | | ||| | ||||| | || ||| Sbjct 463930 ATTCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGCTCCGACT 463989 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | || || || || ||||| || |||||||||||||| Sbjct 463990 TCGAGAGTGATAGTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCAT 464036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471993299971200