Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq19 91.5 1e-13 >seq19 Length=917137 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || |||| ||| || |||||||||||||| || ||||| || | Sbjct 765528 CCTCCACGAAGACGGAGCACCAAATGAAGAGTGGACTCCTTTTGGATATTGTAATCCGAA 765587 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | ||||||||||| || || || | || || || || || || || Sbjct 765588 AGAGTTCTTCCATCCTCCAATTGCTTTCCAGCGAAGATGAGACGTTGCTGATCTGGTGGA 765647 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||||| ||||| |||| ||| || | | | |||||| || || | Sbjct 765648 ATTCCCTCCTTGTCTTGGATTTTAGCCTTGACGTTTTCAATGGTGTCGGAGGCTTCGACT 765707 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||| ||||||||| ||||| || || || ||||| || ||||||||| Sbjct 765708 TCCAAGGTGATGGTCTTTCCAGTGAGGGTCTTGACGAAGATCTGCATT 765755 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || |||| || || || |||||||| || ||||||||||| | Sbjct 764333 CCTCCACGGAGGCGAAGGACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAA 764392 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | ||||||||||| || || || | || || || || || || || Sbjct 764393 AGAGTTCTTCCATCCTCCAATTGCTTTCCAGCGAAGATGAGACGTTGCTGATCTGGTGGG 764452 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||||| ||||| ||| | |||||| | | | |||||| | ||| | Sbjct 764453 ATTCCCTCCTTGTCTTGAATCTTGGCCTTCACGTTTTCAATGGTGTCGGAAGCCTCAACT 764512 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| ||||| |||| || ||||| || |||||||| Sbjct 764513 TCGAGGGTGATGGTCTTTCCAGTCAAGGTCTTGACGAAGATCTGCAT 764559 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || || | ||| || ||||| |||||||| |||||||| |||| Sbjct 764561 CCTCCACGGAGACGGAGGACGAGATGAAGGGTGGATTCCTTTTGGATGTTGTAATCGGAG 764620 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||||||||| || || || | || || | || ||||| || Sbjct 764621 AGAGTGCGGCCATCCTCCAATTGCTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGG 764680 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || || ||||| || || || ||| || | | | |||||| || || Sbjct 764681 ATTCCTTCCTTGTCTTGGATCTTAGC--CTTGACGTTTTCAATGGTGTCGGAGGCTTCGA 764738 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| ||||||||| |||||||||| || ||||| || |||||||| Sbjct 764739 CTTCCAAGGTGATGGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 764787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405071683181950