Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq369 118 7e-22 seq193 118 7e-22 seq19 104 2e-17 seq382 98.7 7e-16 seq30 86.0 4e-12 >seq369 Length=46607 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| ||||| | |||||||| Sbjct 9679 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGTTAGGGACAGTAGGAATCTCGT 9620 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||||||||| ||||| ||||||| Sbjct 9619 TAATCCATTCATGCGCGTCAACAATTAAATGACGA 9585 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| ||||| | |||||||| Sbjct 43073 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGTTAGGGACAGTAGGAATCTCGT 43014 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||||||||| ||||| ||||||| Sbjct 43013 TAATCCATTCATGCGCGTCAACAATTAAATGACGA 42979 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||| Sbjct 252 CTCTCTCTTCAAAGTCCTTTGCAACTTTCCCTCACGGTACTTGTTCGCTATCGCAATCGA 193 Query 20007 GGTAATATTTAGCCTTA 20023 | ||||||||||||| Sbjct 192 GTCGATATTTAGCCTTA 176 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||| Sbjct 40988 CTCTCTCTTCAAAGTCCTTTGCAACTTTCCCTCACGGTACTTGTTCGCTATCGCAATCGA 40929 Query 20007 GGTAATATTTAGCCTTA 20023 | ||||||||||||| Sbjct 40928 GTCGATATTTAGCCTTA 40912 >seq193 Length=297172 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| ||||| | |||||||| Sbjct 111633 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGTTAGGGACAGTAGGAATCTCGT 111574 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||||||||| ||||| ||||||| Sbjct 111573 TAATCCATTCATGCGCGTCAACAATTAAATGACGA 111539 >seq19 Length=917137 Score = 104 bits (114), Expect = 2e-17 Identities = 163/232 (70%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| || ||||| | ||| | ||||||||| ||||| |||||||||||| ||||| | Sbjct 766033 CATT-CCTCCTCTGAGACGGAGCACCAAATGGAGAGTCGACTCCTTTTGAATGTTGTAGT 766091 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 ||||||| ||| | || || || || |||||||| || || || | || ||||| | Sbjct 766092 CAGACAATGTGCGTCCATCCTCCAACTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTG 766151 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 |||| || || ||||| ||| || || ||||| | || || || | || Sbjct 766152 GTGGGATTCCCTCCTTGTCTTGAATCTTGGCTTTGACATTTTCGATTGTGTCGGAAGCTT 766211 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | ||||| | ||| ||||| || || || | || || || || |||||||| Sbjct 766212 CGACTTCAAGTGTGATAGTCTTTCCGGTGAGAGTCTTGACAAAGATCTGCAT 766263 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| || | | ||| | |||||||||||||||| ||||||||| ||||||||||| | Sbjct 765526 TACCTCCACGAAGACGGAGCACCAAATGAAGAGTGGACTCCTTTTGGATATTGTAATCCG 765585 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | | | | || || ||||| ||||| || || || || ||||| ||||| | | Sbjct 765586 AAAGAGTTCTTCCATCCTCCAATTGCTTTCCAGCGAAGATGAGACGTTGCTGATCTGGTG 765645 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | || || ||||| ||||| ||| || || | | || || ||| | Sbjct 765646 GAATTCCCTCCTTGTCTTGGATTTTAGCCTTGACGTTTTCAATGGTGTCGGAGGCTTCGA 765705 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || || || || || || || | ||| || ||||| |||||||| Sbjct 765706 CTTCCAAGGTGATGGTCTTTCCAGTGAGGGTCTTGACGAAGATCTGCAT 765754 Score = 95.1 bits (104), Expect = 8e-15 Identities = 161/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| || ||||| | ||| | ||||| |||||||| |||||||||||| ||||||| Sbjct 766261 CATT-CCTCCTCTGAGACGAAGGACCAAGTGAAGAGTCGACTCCTTTTGAATGTTGTAAT 766319 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | ||||| || | || || | ||||||||||| || || || | ||| || || | Sbjct 766320 CGGACAAGGTGCGGCCATCCTCGAGCTGTTTTCCGGCGAAGATGAGTCTTTGCTGGTCTG 766379 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 |||| ||||| ||||| || || || ||||||| || || || | | Sbjct 766380 GTGGGATTCCTTCCTTGTCTTGGATCTTGGCTTTAACATTCTCGATGGTGTCAGAAGCCT 766439 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | ||||| | ||| ||||| || || || | || || || || |||||||| Sbjct 766440 CGACTTCAAGTGTGATAGTCTTTCCGGTGAGAGTCTTGACAAAGATCTGCAT 766491 >seq382 Length=61203 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||| Sbjct 59632 CTCTCTCTTCAAAGTCCTTTGCAACTTTCCCTCACGGTACTTGTTCGCTATCGCAATCGA 59691 Query 20007 GGTAATATTTAGCCTTA 20023 | ||||||||||||| Sbjct 59692 GTCGATATTTAGCCTTA 59708 >seq30 Length=1219974 Score = 86.0 bits (94), Expect = 4e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 6171 CTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGC 6230 || ||||| |||||| ||| || || | |||||||||||||||||||| | | Sbjct 788405 CTCAACGTGAATCGTGCTGTCGCTGATCCCTTCTACCGCTACAAAATGCCAAAGCTTTCA 788464 Query 6231 GCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTC 6290 || || || || || || |||||||| || ||||| |||||| |||||| |||| | Sbjct 788465 GCTAAAGTTGAAGGCAAAGGAAACGGAATCAAAACTGTCATTTCGAACATGTCTGACATT 788524 Query 6291 GCTAAGGCGCTCGGACGCCC 6310 ||||| || |||| ||||| Sbjct 788525 GCTAAAGCTCTCGAGCGCCC 788544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334933708431455