Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq7 91.5 2e-13 >seq7 Length=1891389 Score = 91.5 bits (100), Expect = 2e-13 Identities = 199/295 (67%), Gaps = 16/295 (5%) Strand=Plus/Plus Query 93146 GTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaa 93205 || || ||||| | ||||| || ||||| ||||| || || || || || ||| Sbjct 174543 GTCAATCCTGGCATAAGTCCGCGCTTCTTAAGCCAGAAGATCGAGGCGAACGATCCACTG 174602 Query 93206 aaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTA 93265 || || || ||||| ||||| || || || | | ||| ||||| || | || || Sbjct 174603 AAGAAGATGCCTTCGACGGCGGCGAAAGCGATGAGACGCTCGGCGAAC---GAGGCCTT- 174658 Query 93266 CTGCTG----ATCCATTTTAAAGCCCAATCGGCTTTTTTCTT----AATACAAGGTAGTG 93317 ||| | ||||| || | |||||| ||||| || ||||| ||| ||| | | Sbjct 174659 CTGATCCGAAATCCACTTGAGAGCCCAGTCGGCCTTCTTCTTGATGAATTCAAACTCGAA 174718 Query 93318 TTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTA 93377 ||| |||||||| | | || || ||| | | || || ||||| || || || | Sbjct 174719 ----GATGGCGTTAAACAACTTATGTCTCTCTTGCTCGTCACGAATGTAGGTCTCAATGA 174774 Query 93378 ACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAA 93432 | |||||||| || || |||| |||||| || || ||||||||||||||||| Sbjct 174775 GCTTCGAATACATCTCCGAGTGGATATTCTCGATGGCGATTTGGAATCCGTAGAA 174829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556837794688200