Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq19 136 3e-27 seq156 131 1e-25 seq157 127 2e-24 seq24 113 4e-20 >seq19 Length=917137 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||||| ||||| || || |||| | ||||| ||| || || Sbjct 764787 ATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACCATCACCTTGGAAGTCGAAGCCTCC 764728 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || ||||||||||| || || ||||| || || Sbjct 764727 GACACCATTGAAAACGTCAAGGCTAAGATCCAAGACAAGGAAGGAATCCCACCAGACCAG 764668 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | || || || ||||| || || || |||||| |||||| |||||||||||||| Sbjct 764667 CAAAGACTCATCTTCGCCGGAAAGCAATTGGAGGATGGCCGCACTCTCTCCGATTACAAC 764608 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||| ||||||||| | ||| | || | || | || |||||| Sbjct 764607 ATCCAAAAGGAATCCACCCTTCATCTCGTCCTCCGTCTCCGTGGAGGT 764560 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||| | ||||| || || |||| |||||||| ||| | || Sbjct 766263 ATGCAGATCTTTGTCAAGACTCTCACCGGAAAGACTATCACACTTGAAGTCGAAGCTTCC 766204 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || ||||| || ||||||||||||||||| || ||||| ||||| Sbjct 766203 GACACAATCGAAAATGTCAAAGCCAAGATTCAAGACAAGGAGGGAATCCCACCAGATCAG 766144 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || || ||||| || ||||| |||||| ||||| | || || |||||| Sbjct 766143 CAGAGACTCATCTTCGCCGGAAAGCAGTTGGAGGATGGACGCACATTGTCTGACTACAAC 766084 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 |||||||| || || || | ||||| || Sbjct 766083 ATTCAAAAGGAGTCGACTCTCCATTTGGT 766055 Score = 131 bits (144), Expect = 1e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||| | ||||| || || |||| |||||||| || | | Sbjct 766491 ATGCAGATCTTTGTCAAGACTCTCACCGGAAAGACTATCACACTTGAAGTCGAGGCTTCT 766432 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | ||| || || ||||||||||| || || ||||| || || Sbjct 766431 GACACCATCGAGAATGTTAAAGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGACCAG 766372 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | || || || ||||| |||||| | |||||| ||||||| | |||||||||||| Sbjct 766371 CAAAGACTCATCTTCGCCGGAAAACAGCTCGAGGATGGCCGCACCTTGTCCGATTACAAC 766312 Query 22399 ATTCAAAAAGAATCCAC 22415 |||||||| || || || Sbjct 766311 ATTCAAAAGGAGTCGAC 766295 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| | ||||| ||| || || Sbjct 765015 ATGCAGATCTTCGTGAAGACCCTCACCGGAAAGACCATCACCTTGGAAGTCGAAGCCTCC 764956 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || |||||||||||||| || ||||| |||||| Sbjct 764955 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCACCAGATCAA 764896 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || ||||| || ||| | |||||| ||||||| | ||||| || ||| Sbjct 764895 CAGCGTTTGATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACCTTGTCCGACTATAAC 764836 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || ||| | || || ||| | || ||| | |||||| Sbjct 764835 ATCCAGAAGGAGTCTACCCTTCACTTGGTTCTCCGCTTGAGAGGAGGT 764788 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| | ||||| ||| || || Sbjct 764050 ATGCAGATCTTCGTGAAGACCCTCACCGGAAAGACCATCACCTTGGAAGTCGAAGCCTCC 763991 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || |||||||||||||| || ||||| |||||| Sbjct 763990 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCACCAGATCAA 763931 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || ||||| || ||| | |||||| ||||||| | ||||| || ||| Sbjct 763930 CAGCGTTTGATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACCTTGTCCGACTATAAC 763871 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || ||| | ||| | ||| | || | || ||||| Sbjct 763870 ATCCAGAAGGAGTCGACCCTCCATCTCGTTCTCCGTCTTCGTGGAGG 763824 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || ||||| || || || ||||| |||| || || ||||| | || Sbjct 766719 ATGCAAATCTTCGTCAAAACGTTGACTGGAAAAACCATCACCCTGGAGGTGGAGGCTTCC 766660 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || || || || |||||||| |||||||| || ||| Sbjct 766659 GACACCATCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGAATTCCACCAGACCAA 766600 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || ||||| || ||| | |||||| || || | || || |||||| Sbjct 766599 CAACGTCTCATCTTCGCCGGAAAGCAGCTCGAGGATGGACGGACTCTGTCTGACTACAAC 766540 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || || | ||| | ||| | || | |||||||| Sbjct 766539 ATCCAGAAGGAGTCTACTCTTCATCTCGTTCTTCGTCTCCGCGGAGG 766493 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| | ||||| ||| || || Sbjct 765754 ATGCAGATCTTCGTCAAGACCCTCACTGGAAAGACCATCACCTTGGAAGTCGAAGCCTCC 765695 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| ||||| |||||||||||||| |||||||| ||||| Sbjct 765694 GACACCATTGAAAACGTCAAGGCTAAAATCCAAGACAAGGAGGGAATTCCACCAGATCAG 765635 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || || || || || || |||||| | || | || |||||||| Sbjct 765634 CAACGTCTCATCTTCGCTGGAAAGCAATTGGAGGATGGAAGAACTCTTTCGGATTACAAT 765575 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||| || ||||| | ||||| || | || | || |||||| Sbjct 765574 ATCCAAAAGGAGTCCACTCTTCATTTGGTGCTCCGTCTTCGTGGAGGT 765527 Score = 105 bits (116), Expect = 6e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||||| ||||| || || |||| | ||||| || || || Sbjct 765298 ATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACCATCACCTTGGAAGTCGAGGCCTCC 765239 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || |||||||||||||| || || ||||| |||||| Sbjct 765238 GACACCATTGAGAATGTCAAGGCCAAGATTCAAGACAAGGAAGGAATCCCACCAGATCAA 765179 Query 22339 CAACGTCTTATATTTGCCGGCAA 22361 ||||||||||| |||||||| || Sbjct 765178 CAACGTCTTATCTTTGCCGGTAA 765156 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || ||| | || || || || ||||||| || || ||| || | Sbjct 765526 ATGCAGATTTTCGTCAAGACTCTCACTGGAAAGACTATCACTCTCGAGGTCGAAGCCTCT 765467 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | | || || || || || ||||| || || ||||| || || Sbjct 765466 GATACCATTGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGAATCCCACCAGACCAG 765407 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || || || || || || || |||||| |||||| ||||||| || ||| Sbjct 765406 CAAAGATTGATCTTCGCTGGAAAGCAATTGGAGGATGGTCGCACCCTCTCCGACTATAAC 765347 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||| ||||| ||| | || || || | || | || |||||| Sbjct 765346 ATTCAAAAGGAATCTACCCTTCACTTGGTCCTTCGTCTTCGTGGAGGT 765299 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || || || || |||| || ||||| || | || Sbjct 764559 ATGCAGATCTTCGTCAAGACCTTGACTGGAAAGACCATCACCCTCGAAGTTGAGGCTTCC 764500 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || ||||||||||||||||| || ||||| ||||| Sbjct 764499 GACACCATTGAAAACGTGAAGGCCAAGATTCAAGACAAGGAGGGAATCCCACCAGATCAG 764440 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || || || || || || |||||| | || | || || |||||| Sbjct 764439 CAACGTCTCATCTTCGCTGGAAAGCAATTGGAGGATGGAAGAACTCTTTCGGACTACAAC 764380 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || || | || || || | || | || |||||| Sbjct 764379 ATCCAGAAGGAGTCGACTCTCCACTTGGTCCTTCGCCTCCGTGGAGGT 764332 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || ||||| || | ||||| || || ||||| | || || || || | Sbjct 764331 ATGCAAATCTTCGTTAAGACCCTCACCGGAAAGACCATCACTTTGGAGGTTGAGGCCTCA 764272 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || || ||||||||||| || |||||||| ||||| Sbjct 764271 GACACCATCGAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATTCCACCAGATCAG 764212 Query 22339 CAACGTCTTATATTTGCCGGCAA 22361 ||| | ||||| |||||||| || Sbjct 764211 CAAAGACTTATCTTTGCCGGTAA 764189 >seq156 Length=445966 Score = 131 bits (144), Expect = 1e-25 Identities = 178/246 (72%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || ||| | || ||||| || | || || ||||| || || || Sbjct 424560 ATGCAAATCTTCGTCAAGACTCTGACGGGTAAGACTATTACCCTCGAAGTCGAGGCCTCC 424501 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || |||| || || ||||||||||| || |||||||| ||||| Sbjct 424500 GATACCATCGAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATTCCACCAGATCAG 424441 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | || || || ||||| || || | |||||| || || ||||||| |||||| Sbjct 424440 CAAAGACTGATCTTCGCCGGAAAGCAACTCGAGGATGGACGTACTCTCTCCGACTACAAC 424381 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTT-TCCATTTTA 22457 || ||||| || || || | || || ||| | || | || |||||||| | ||||| | Sbjct 424380 ATCCAAAAGGAGTCGACTCTCCACTTGGTTCTCCGTCTCCGTGGAGGTTTGTTCATTTCA 424321 Query 22458 -AAATT 22462 ||||| Sbjct 424320 TAAATT 424315 >seq157 Length=243809 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || ||| | || ||||| || | || || ||||| || || || Sbjct 217987 ATGCAAATCTTCGTCAAGACTCTGACGGGTAAGACTATTACCCTCGAAGTCGAGGCCTCC 218046 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || |||| || || ||||||||||| || |||||||| ||||| Sbjct 218047 GATACCATCGAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATTCCACCAGATCAG 218106 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | || || || ||||| || || | |||||| || || ||||||| |||||| Sbjct 218107 CAAAGACTGATCTTCGCCGGAAAGCAACTCGAGGATGGACGTACTCTCTCCGACTACAAC 218166 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTT 22448 || ||||| || || || | || || ||| | || | || |||||||| Sbjct 218167 ATCCAAAAGGAGTCGACTCTCCACTTGGTTCTCCGTCTCCGTGGAGGTTT 218216 >seq24 Length=791117 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || ||| | || || || || ||||||| ||||| | | || | Sbjct 463407 ATGCAGATTTTCGTCAAGACTCTCACTGGAAAGACTATCACTCTCGAAGTCGGAGCCTCT 463348 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | | || || || || || ||||| || || ||||| || || Sbjct 463347 GATACCATTGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGAATCCCACCAGACCAG 463288 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | || || || ||||| || || || |||||| |||||| ||||||| || ||| Sbjct 463287 CAAAGACTCATCTTCGCCGGAAAGCAATTGGAGGATGGTCGCACCCTCTCCGACTATAAC 463228 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||||||| ||||| ||| | || || || | || | || ||||| Sbjct 463227 ATTCAAAAGGAATCTACCCTTCACTTGGTCCTTCGTCTCCGTGGAGG 463181 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || ||| | || || || || ||||||| ||||| | | || | Sbjct 464036 ATGCAGATTTTCGTCAAGACTCTCACTGGAAAGACTATCACTCTCGAAGTCGGAGCCTCT 463977 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | | || || || || || ||||| || || ||||| || || Sbjct 463976 GATACCATTGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGAATCCCACCAGACCAG 463917 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | || || || ||||| || || || |||||| |||||| ||||||| || ||| Sbjct 463916 CAAAGACTCATCTTCGCCGGAAAGCAATTGGAGGATGGTCGCACCCTCTCCGACTATAAC 463857 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||| ||||| || | || || || | || | || |||||| Sbjct 463856 ATTCAAAAGGAATCTACTCTTCACTTGGTCCTTCGTCTTCGTGGAGGT 463809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419711093487325