Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq19 118 9e-22 seq24 86.0 5e-12 >seq19 Length=917137 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | ||| | || ||||| ||||| |||||||||||| Sbjct 764558 ATACCTCCACGGAGACGGAGGACGAGATGAAGGGTGGATTCCTTTTGGATGTTGTAATCG 764617 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| || ||| || | ||| || || ||| ||||||| | || ||||| || Sbjct 764618 GAGAGAGTGCGGCCATCCTCCAATTGCTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGT 764677 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||| ||||| ||||| || | | ||||| |||||||| || |||| Sbjct 764678 GGGATTCCTTCCTTGTCTTGGATCTTAGCCTTGACGTTTTCAATGGTGTCGGAGGCTTCG 764737 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || || ||||||| ||| || || || |||||||| Sbjct 764738 ACTTCCAAGGTGATGGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 764787 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || |||||||||||||||||| || || || ||| || || ||||| || Sbjct 766295 GTCGACTCCTTTTGAATGTTGTAATCGGACAAGGTGCGGCCATCCTCGAGCTGTTTTCCG 766354 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||| | || ||||| || || || ||||| ||||| ||||| ||| Sbjct 766355 GCGAAGATGAGTCTTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCTTTA 766414 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| | | ||||| || | || | || || ||||| ||||| Sbjct 766415 ACATTCTCGATGGTGTCAGAAGCCTCGACTTCAAGTGTGATAGTCTTTCCGGTGAGAGTC 766474 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 766475 TTGACAAAGATCTGCAT 766491 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 || ||||| | || || || |||||||||||||| || || || || ||| || Sbjct 766055 ACCAAATGGAGAGTCGACTCCTTTTGAATGTTGTAGTCAGACAATGTGCGTCCATCCTCC 766114 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 | || || || ||| ||||||| | ||| || || || || || || || ||||| | Sbjct 766115 AACTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGGATTCCCTCCTTGTCTTGA 766174 Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353 ||||| ||| | | ||| | ||||||| | |||||| || | || | || || Sbjct 766175 ATCTTGGCTTTGACATTTTCGATTGTGTCGGAAGCTTCGACTTCAAGTGTGATAGTCTTT 766234 Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||| ||||| || ||||| |||||||| Sbjct 766235 CCGGTGAGAGTCTTGACAAAGATCTGCAT 766263 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || || || | |||||||| ||||||||||| || ||| Sbjct 765297 ATACCTCCACGAAGACGAAGGACCAAGTGAAGGGTAGATTCCTTTTGAATGTTATAGTCG 765356 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || ||| ||| || | ||| || |||||| |||| | | || ||||| || Sbjct 765357 GAGAGGGTGCGACCATCCTCCAATTGCTTTCCAGCGAAGATCAATCTTTGCTGGTCTGGT 765416 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||| || || ||||| || | | |||| ||| || | || |||| Sbjct 765417 GGGATTCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGCTTCG 765476 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || || || || ||||| || || ||||||||||| Sbjct 765477 ACCTCGAGAGTGATAGTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCAT 765526 >seq24 Length=791117 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || || || | |||||||| ||||||||||| || ||| Sbjct 463807 ATACCTCCACGAAGACGAAGGACCAAGTGAAGAGTAGATTCCTTTTGAATGTTATAGTCG 463866 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || ||| ||| || | ||| || || ||| ||||||| | || ||||| || Sbjct 463867 GAGAGGGTGCGACCATCCTCCAATTGCTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGT 463926 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||| || || ||||| || | | |||| ||| || | || | || Sbjct 463927 GGGATTCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGCTCCG 463986 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || || || || ||||| || || ||||||||||| Sbjct 463987 ACTTCGAGAGTGATAGTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCAT 464036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420117477117660