Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq7 120 6e-22 >seq7 Length=1891389 Score = 120 bits (132), Expect = 6e-22 Identities = 223/325 (69%), Gaps = 3/325 (1%) Strand=Plus/Minus Query 42821 CAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCA 42880 ||| ||||| || || ||| | || || || ||||| ||| ||| | | |||| | Sbjct 174235 CAGAGACGAAGGACTCCATCGTGATTTCGCATGCCTTTTGTACTCCATGCT--TCAGA-A 174179 Query 42881 CAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGA 42940 ||||| | | | ||||| || | ||||||| || ||||| | |||||| |||| Sbjct 174178 CAAGCTCACTCAAGAGCGCATCTACGAGATCATCAGCGACGCCGTCAAAATCGAGCAGGA 174119 Query 42941 GTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAA 43000 ||||||||| || | || || || | || |||| |||||| ||||||| | Sbjct 174118 GTTCCTCACCGAGGCACTTCCAGTCGACATGATCGGAATGAACTGTCGTCTCATGTCGCA 174059 Query 43001 GTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAA 43060 |||||| ||| |||||| || || | || | || | || | | | | ||| Sbjct 174058 GTACATTGAGTTCGTCGCGGATCACTTGCTCGCCGAGCTCGGATGCGACAAGTTGTTCAA 173999 Query 43061 CACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTT 43120 | | ||| |||||||| |||||||||||||| | || || ||||||||||| || Sbjct 173998 GGTGAAGAACCCATTCGACTTCATGGAGAACATCTCCATCGATGGAAAGACCAACTTCTT 173939 Query 43121 CGAGAAGCGCGTCGCCGACTACCAG 43145 ||||||||||||| |||| |||||| Sbjct 173938 CGAGAAGCGCGTCTCCGAGTACCAG 173914 Score = 116 bits (128), Expect = 7e-21 Identities = 208/298 (70%), Gaps = 8/298 (3%) Strand=Plus/Minus Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 || ||||| || || |||||| || | ||||||||| ||||| || ||||| ||||| Sbjct 174859 AATGAGGTAAAGGTCTCTGAGGCCCGTTTCTTCTACGGATTCCAAATCGCCATCGAGAAT 174800 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCC-TG--GATCCCGTCGAG 42599 | ||||| ||| |||| | || || | | || ||||| | || || | | ||| Sbjct 174799 ATCCACTCGGAGATGTATTCGAAGCTCATTGAGACCTACATTCGTGACGAGCAAGA-GAG 174741 Query 42600 -CGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTG 42658 | ||| | |||| || ||||| | | | ||||||||||||||| ||||| Sbjct 174740 ACATAA---GTTGTTTAACGCCATCTTCGAGTTTGAATTCATCAAGAAGAAGGCCGACTG 174684 Query 42659 GGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTAC 42718 ||| ||||| ||||| | || | || |||||| |||| | || | || || | Sbjct 174683 GGCTCTCAAGTGGATTTCGGATCAGAAGGCCTCGTTCGCCGAGCGTCTCATCGCTTTCGC 174624 Query 42719 CGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG 42776 ||||||||| |||||||||||| || | |||||||| ||||||||||| ||| || Sbjct 174623 CGCCGTCGAAGGCATCTTCTTCAGTGGATCGTTCGCCTCGATCTTCTGGCTTAAGAAG 174566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944300186986800