Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq19 89.7 4e-13 >seq19 Length=917137 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 |||||||| || || ||||||| ||| || || |||||| ||||||||||| || | | Sbjct 766037 CCTCCTCTGAGACGGAGCACCAAATGGAGAGTCGACTCCTTTTGAATGTTGTAGTCAGAC 766096 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 ||| || | || ||||| ||||| ||||| || || || | ||||||||| || Sbjct 766097 AATGTGCGTCCATCCTCCAACTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGG 766156 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACT---CACACTATCAGTAGATTCG 34077 | | ||| |||| | | | | || |||| || | | | | || | || |||| Sbjct 766157 ATTCCCTCCTTGT-CTTGAATCTTGGCTT--TGACATTTTCGATTGTGTCGGAAGCTTCG 766213 Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 ||| | || || || |||||||| || || || |||||||| |||||| Sbjct 766214 ACTTCAAGTGTGATAGTCTTTCCGGTGAGAGTCTTGACAAAGATCTGCATT 766264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397046406450610