Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq314 107 4e-18 seq7 96.9 8e-15 >seq314 Length=102929 Score = 107 bits (118), Expect = 4e-18 Identities = 147/200 (74%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 68406 CAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACT 68465 |||||||| | || || |||||||||||||| ||||| ||||| || | || || ||| Sbjct 4092 CAAGCGTCCACATCGGAATTGTATGGAAAAGTACAAGAGATTCCACAAAGTGAGAAGACT 4033 Query 68466 CCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGT-AA 68524 || || ||||| || || |||| ||| || ||| |||| | || ||||| ||| Sbjct 4032 CCATTCTATCCAAGATCTCCATACGCTGTCGCCAAGATGTATGGATACTGGAT-TGTGGT 3974 Query 68525 AAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGT-TTCAATCACGAGA 68583 || || |||||| | |||||||||| | |||||| | || || | |||||||| |||| Sbjct 3973 CAACTATCGTGAGGCCTATAACATGTTCGCATGCAA-TGGAATTCTCTTCAATCATGAGA 3915 Query 68584 GTCCCAACAGAGGCCATCAG 68603 |||| ||||| ||||| Sbjct 3914 GTCCACGTAGAGGTAATCAG 3895 Score = 105 bits (116), Expect = 1e-17 Identities = 137/184 (74%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 68406 CAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACT 68465 |||||||| | || || |||||||||||||| ||||| ||||| || | || || ||| Sbjct 40039 CAAGCGTCCACATCGGAATTGTATGGAAAAGTACAAGAGATTCCACAAAGTGAGAAGACT 39980 Query 68466 CCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGT-AA 68524 || || ||||| || || |||| ||| || ||| |||| | || ||||| ||| Sbjct 39979 CCATTCTATCCAAGATCTCCATACGCTGTCGCCAAGATGTATGGATACTGGAT-TGTGGT 39921 Query 68525 AAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGT-TTCAATCACGAGA 68583 || || |||||| | |||||||||| | |||||| | || || | |||||||| |||| Sbjct 39920 CAACTATCGTGAGGCCTATAACATGTTCGCATGCAA-TGGAATTCTCTTCAATCATGAGA 39862 Query 68584 GTCC 68587 |||| Sbjct 39861 GTCC 39858 Score = 102 bits (112), Expect = 2e-16 Identities = 136/184 (74%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 68406 CAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACT 68465 |||||||| | || || || ||||||||||| ||||| ||||| || | || || ||| Sbjct 18876 CAAGCGTCCACATCGGAATTATATGGAAAAGTACAAGAGATTCCACAAAGTGAGAAGACT 18817 Query 68466 CCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGT-AA 68524 || || ||||| || || |||| ||| || ||| |||| | || ||||| ||| Sbjct 18816 CCATTCTATCCAAGATCTCCATACGCTGTCGCCAAGATGTATGGATACTGGAT-TGTGGT 18758 Query 68525 AAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGT-TTCAATCACGAGA 68583 || || |||||| | |||||||||| | |||||| | || || | |||||||| |||| Sbjct 18757 CAACTATCGTGAGGCCTATAACATGTTCGCATGCAA-TGGAATTCTCTTCAATCATGAGA 18699 Query 68584 GTCC 68587 |||| Sbjct 18698 GTCC 18695 Score = 102 bits (112), Expect = 2e-16 Identities = 136/184 (74%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 68406 CAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACT 68465 ||||| || | || || |||||||||||||| ||||| ||||| || | || || ||| Sbjct 54412 CAAGCATCCACATCGGAATTGTATGGAAAAGTACAAGAGATTCCGCAAAGTGAGAAGACT 54353 Query 68466 CCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGT-AA 68524 || || ||||| || || |||| ||| || ||| |||| | || ||||| ||| Sbjct 54352 CCATTCTATCCAAGATCTCCATACGCTGTCGCCAAGATGTATGGATACTGGAT-TGTGGT 54294 Query 68525 AAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGT-TTCAATCACGAGA 68583 || || |||||| | |||||||||| | |||||| | || || | |||||||| |||| Sbjct 54293 CAACTATCGTGAGGCCTATAACATGTTCGCATGCAA-TGGAATTCTCTTCAATCATGAGA 54235 Query 68584 GTCC 68587 |||| Sbjct 54234 GTCC 54231 >seq7 Length=1891389 Score = 96.9 bits (106), Expect = 8e-15 Identities = 210/307 (68%), Gaps = 8/307 (3%) Strand=Plus/Minus Query 243451 CTTATGTATTCAAAGCTCCAGAACAAGCTACCATTCGAAACGG--TCAAACAAATCATCA 243508 ||| |||| || | ||| ||||||||||| || || | | | || | | ||||||| Sbjct 174201 CTTTTGTACTCCATGCTTCAGAACAAGCT--CACTCAAGAGCGCATCTACGAGATCATCA 174144 Query 243509 CAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTT-ATT 243567 || || || ||| ||| |||| ||| | ||| || ||||| | || | | || Sbjct 174143 GCGACGCCGTCAAAATCGAGCAGGAGTTCCTCACCGAGGCACTTCCA-GTCGACATGATC 174085 Query 243568 GGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATC 243627 || ||||||| | |||||| |||||||| || ||||| || || | | | || | Sbjct 174084 GGAATGAACTGTCGTCTCATGTCGCAGTACATTGAGTTCGTCGCGGATCACTTGCTCGCC 174025 Query 243628 GCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATT 243687 | ||| || | || || ||| ||| |||||||| || | ||| |||||| ||| Sbjct 174024 GAGCTCGGATGCGACAAGTTGTTCAAGGTGAAGAACCCATTCGACTTCATGGAGAACATC 173965 Query 243688 TCGCTTCAAGGGAAA-ACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAACGCCCTGG 243746 || | || | ||||| || ||||||||||| ||||| ||| || || || || || || Sbjct 173964 TC-CATCGATGGAAAGACCAACTTCTTCGAGAAGCGCGTCTCCGAGTACCAGCGTCCAGG 173906 Query 243747 TGTGATG 243753 ||| ||| Sbjct 173905 TGTTATG 173899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102833298201750