Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq17 163 3e-35 seq202 93.3 5e-14 >seq17 Length=1338299 Score = 163 bits (180), Expect = 3e-35 Identities = 345/512 (67%), Gaps = 7/512 (1%) Strand=Plus/Plus Query 114103 CCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGG 114162 |||||| ||||| ||||| |||| ||| | || ||||| | | | || |||||| Sbjct 167175 CCACATGTCAAATTGGAGTTGCCCTTTTGAGACAGGTGATCCTTGATAAGTAGAGTATGG 167234 Query 114163 GCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAA 114222 || || ||| ||||||||| | || || ||||| || || | || ||||| || || Sbjct 167235 TCCATCTTTCTCAGCCAATTCGCAACTGGCTTCGAGAGCAGCATAGTAGATTGTTTCGAA 167294 Query 114223 AATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAA 114282 ||||| |||| | |||| | || ||| || | || || ||| || || Sbjct 167295 GATGCGCTTGTTCAAATCTCTGGCTCCTTCTGAAGTGAATGGGAATCTCATCAACATGAA 167354 Query 114283 TACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCG 114342 ||| ||||| ||||| || || || |||||||| ||||| | ||| || || || || Sbjct 167355 ACAATCAGCGAGTCCTTGAACTCCAAGTCCAATTGGACGATGACGCATGTTCGAGTTACG 167414 Query 114343 AGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAAC 114402 || || || || ||| |||| |||||| | | | || |||||||| || | || Sbjct 167415 TGCTTCTTCAACTGGGTAATAATTGACATCGATGATCTTGTTCAGATTTTTCGTTATCAC 167474 Query 114403 CTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTT 114462 || || | ||| |||||| | | ||||||| | |||| | ||||| | | Sbjct 167475 TTTGGTAACCTCAGCAAGCTTCTTGAAATCAAACGTCT---TCTCAGGAGTGACAAA--T 167529 Query 114463 AGGA--AGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCT 114520 || || ||||| || || ||||| || |||| | ||||||| | ||| |||||| Sbjct 167530 CGGTTGAGAGCGATAGAAGCAAGATTGCAGACAGCGATCTCATCTGGAGCAGAGTACTCG 167589 Query 114521 ATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTT 114580 || |||||||| |||| ||| || | || ||||| || | ||| | |||||| ||||| Sbjct 167590 ATGATTTCCGTGCACAGATTGGAGCATTTGATGGTTCCGAGGTTTTGTTGATTGGACTTG 167649 Query 114581 GTGTTACACGCATCCTTGTAAAGCATGTATGG 114612 || ||||||||||| |||||||| Sbjct 167650 CGATTGGCAGCATCCTTGTAGGTGATGTATGG 167681 Score = 150 bits (166), Expect = 2e-31 Identities = 298/440 (68%), Gaps = 6/440 (1%) Strand=Plus/Plus Query 113602 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGACAACTT 113661 ||||||||| || |||||||| |||| |||||| | || | ||||| |||| | Sbjct 166620 GTAGTACATTCCAGTCTTGAGTCCCTTCTTCCATCCGTAGAAGTGCATTGAGGTGATACC 166679 Query 113662 GGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCC 113721 || | |||| | ||||| | ||| | ||| |||||||||||||| ||| Sbjct 166680 GGCGTAGCTTGGTTTGGCCATGTGAATGTTGAGTGATTGAGATTGATCGATGAATGCTCC 166739 Query 113722 ACGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAG 113781 |||||| || ||||| || || | |||||| ||| ||||| || || | |||||| Sbjct 166740 ACGATCAGCAGCCATCTCGATAATCTCCTTCTGTGAGATCTCCCATACTGTGCGGTAGAG 166799 Query 113782 GTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACCCGCCTTGACCAT 113841 | ||| || ||||||||||| | ||| ||||| ||||| ||| ||| | || Sbjct 166800 TTCCTTGATGTCATCTGGGATTCCTGGGATGTTTTGAATGGATCCATTG---TTGGCAAT 166856 Query 113842 GAGA---TCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATG 113898 ||| | |||||| || | ||||| | || ||| | ||||| | | || Sbjct 166857 GAGTCTGTTCTTCATCTCATCGGACCACAATCCTCTCTCGACCAAATCCTTGAGCATGTG 166916 Query 113899 CTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTA 113958 ||| |||| || ||||| | ||| |||| |||||||||| ||||| Sbjct 166917 TGGATTCACAATCTGGAAGTCACCGGAGAGCACACGTCGGGAGTAGATATTGGATGTGTA 166976 Query 113959 TGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGC 114018 |||||||| | || ||||| || | ||||| |||||||| || || ||||| ||||| Sbjct 166977 TGGCTCAATAGATTCGTTGTTTCCAAGAATTTGAGCGGTGGAAGCAGTTGGCATCGGTGC 167036 Query 114019 CATGAGAAGGCTGTTACGGA 114038 ||| ||||| ||||| |||| Sbjct 167037 CATTAGAAGACTGTTGCGGA 167056 >seq202 Length=205773 Score = 93.3 bits (102), Expect = 5e-14 Identities = 230/345 (67%), Gaps = 8/345 (2%) Strand=Plus/Minus Query 113698 TTGGGATTGATCGATGAAGCGTCCACGATCCGCCGCCATATCAATCACATCCTTCATCTT 113757 ||| |||||||| ||||| ||||||||| || ||||| || || |||||| Sbjct 120589 TTGAGATTGATCAATGAATGCTCCACGATCAGCGGCCATCTCGATGGTTTCCTTCTGTGA 120530 Query 113758 GATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTG 113817 || ||||| || || | ||||| | ||| || || || || || | ||| ||||| Sbjct 120529 TATCTCCCATACGGTGCGGTAGAAATCCTTGATGTCGTCAGGAATTCCTGCGAAGTTTTG 120470 Query 113818 GATGGAGCCACCCGCCTTGACCATGAGA---TCCTTCATATCCTTTGACCAGAGACCAAT 113874 || || || || | ||||| | |||||| || || ||||| | || | Sbjct 120469 AATAGATCCGTTG---TTAGCGATGAGTGTGTTCTTCATCTCATTGGACCACAATCCTCT 120413 Query 113875 CTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCG 113934 || | | ||||| | | || ||| |||| || || || | ||| ||| Sbjct 120412 CTCAATCAAATCCTTGAGCATGTGTGGATTCACAATCTGGAAGTCGCCGGAGAGCACGCG 120353 Query 113935 TCTCAGA-TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGG 113993 | ||| |||||||| | ||||||||||| | |||| |||||||| | ||||| | Sbjct 120352 CCG-AGAGTAGATATTCGATGTGTATGGCTCTATAGACTCGTTGTTACCAAGAATTTGAG 120294 Query 113994 CGGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGA 114038 ||||||| || || ||||| || ||||| |||| |||||||||| Sbjct 120293 CGGTGGAAGCAGTTGGCATCGGCGCCATTCGAAGACTGTTACGGA 120249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597328921829400