Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq19 116 4e-21 seq24 105 7e-18 seq157 104 2e-17 seq156 104 2e-17 >seq19 Length=917137 Score = 116 bits (128), Expect = 4e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||||| || ||||| ||||| ||||||||||| | || ||||| | || Sbjct 764576 AGGACGAGATGAAGGGTGGATTCCTTTTGGATGTTGTAATCGGAGAGAGTGCGGCCATCC 764635 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | ||||| ||||| | ||||| | |||||||| || || |||||||| || ||| Sbjct 764636 TCCAATTGCTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGGATTCCTTCCTTGTCT 764695 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || || | || || ||| || ||||| | || | |||| Sbjct 764696 TGGATCTTAGCCTTGACGTTTTCAATGGTGTCGGAGGCTTCGACTTCCAAGGTGATGGTC 764755 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || ||||||||||| || ||||| || ||||| Sbjct 764756 TTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 764787 Score = 111 bits (122), Expect = 2e-19 Identities = 149/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| ||||| || ||||||||||||||||| | | |||||| | || || ||||| Sbjct 766289 TGAAGAGTCGACTCCTTTTGAATGTTGTAATCGGACAAGGTGCGGCCATCCTCGAGCTGT 766348 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || ||||| | ||||| | |||||||| || || |||||||| || ||||| | | || Sbjct 766349 TTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGGA-TCTT 766407 Query 64361 TGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 ||||| ||| ||| | || ||| || || ||||| | || | ||||| ||||| Sbjct 766408 GGCTTTAACATTCTCGATGGTGTCAGAAGCCTCGACTTCAAGTGTGATAGTCTTTCCGGT 766467 Query 64420 CAAAGTTTTTACGAAAATTTGCATT 64444 | ||| || || || || |||||| Sbjct 766468 GAGAGTCTTGACAAAGATCTGCATT 766492 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | ||| | ||||| || |||||||||||||| || | | ||||| | || Sbjct 766052 AGCACCAAATGGAGAGTCGACTCCTTTTGAATGTTGTAGTCAGACAATGTGCGTCCATCC 766111 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | |||||| ||||| | ||||| | |||||| || || || ||||| || || ||| Sbjct 766112 TCCAACTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGGATTCCCTCCTTGTCT 766171 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || | | || ||||| ||| || | ||| || || || ||||| | || | || Sbjct 766172 TG-AATCTTGGCTTTGACATTTTCGATTGTGTCGGAAGCTTCGACTTCAAGTGTGATAGT 766230 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||| ||||| | ||| || || || || |||||| Sbjct 766231 CTTTCCGGTGAGAGTCTTGACAAAGATCTGCATT 766264 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || ||||| ||||||||||| || || | || |||||| | || || | ||| Sbjct 765324 TGAAGGGTAGATTCCTTTTGAATGTTATAGTCGGAGAGGGTGCGACCATCCTCCAATTGC 765383 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || || || | || | | |||||||| || || |||||||| || || || || || Sbjct 765384 TTTCCAGCGAAGATCAATCTTTGCTGGTCTGGTGGGATTCCTTCCTTATCCTGGATCTTG 765443 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| || ||| | |||||| ||| || || || | ||| | ||||| || || Sbjct 765444 GCCTTCACGTTCTCAATGGTATCAGAGGCTTCGACCTCGAGAGTGATAGTCTTTCCAGTG 765503 Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443 | ||| || |||||||| ||||| Sbjct 765504 AGAGTCTTGACGAAAATCTGCAT 765526 >seq24 Length=791117 Score = 105 bits (116), Expect = 7e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || ||||| ||||||||||| || || | || |||||| | || || | ||| Sbjct 463205 TGAAGGGTAGATTCCTTTTGAATGTTATAGTCGGAGAGGGTGCGACCATCCTCCAATTGC 463264 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || ||||| | ||||| | |||||||| || || |||||||| || || || || || Sbjct 463265 TTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGGATTCCTTCCTTATCCTGGATCTTG 463324 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| || ||| | |||||| ||| | ||||| | ||| | ||||| || || Sbjct 463325 GCCTTCACGTTCTCAATGGTATCAGAGGCTCCGACTTCGAGAGTGATAGTCTTTCCAGTG 463384 Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443 | ||| || |||||||| ||||| Sbjct 463385 AGAGTCTTGACGAAAATCTGCAT 463407 Score = 105 bits (116), Expect = 7e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || ||||| ||||||||||| || || | || |||||| | || || | ||| Sbjct 463834 TGAAGAGTAGATTCCTTTTGAATGTTATAGTCGGAGAGGGTGCGACCATCCTCCAATTGC 463893 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || ||||| | ||||| | |||||||| || || |||||||| || || || || || Sbjct 463894 TTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGGATTCCTTCCTTATCCTGGATCTTG 463953 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| || ||| | |||||| ||| | ||||| | ||| | ||||| || || Sbjct 463954 GCCTTCACGTTCTCAATGGTATCAGAGGCTCCGACTTCGAGAGTGATAGTCTTTCCAGTG 464013 Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443 | ||| || |||||||| ||||| Sbjct 464014 AGAGTCTTGACGAAAATCTGCAT 464036 >seq157 Length=243809 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || ||||| |||||||| || | || || || | || || || ||||| ||| Sbjct 218183 GTCGACTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGTCCATCCTCGAGTTGCTTTCCG 218124 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || || | ||||| || || ||||||||||| || ||||| || || ||| Sbjct 218123 GCGAAGATCAGTCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGGATCTTAGCCTTG 218064 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | ||||| ||| || ||||| | || | ||||| || |||| ||| Sbjct 218063 ACATTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGTAATAGTCTTACCCGTCAGAGTC 218004 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| |||||||| Sbjct 218003 TTGACGAAGATTTGCAT 217987 >seq156 Length=445966 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || ||||| |||||||| || | || || || | || || || ||||| ||| Sbjct 424364 GTCGACTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGTCCATCCTCGAGTTGCTTTCCG 424423 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || || | ||||| || || ||||||||||| || ||||| || || ||| Sbjct 424424 GCGAAGATCAGTCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGGATCTTAGCCTTG 424483 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | ||||| ||| || ||||| | || | ||||| || |||| ||| Sbjct 424484 ACATTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGTAATAGTCTTACCCGTCAGAGTC 424543 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| |||||||| Sbjct 424544 TTGACGAAGATTTGCAT 424560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499624158424200